RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CD320Q9NPF0 282 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ITM2CQ9NQX7 267 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 INTS7Q9NVH2 962 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 DKK3Q9UBP4 350 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 RAPGEFL1Q9UHV5 662 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 STOML2Q9UJZ1 356 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ACSL5Q9ULC5 683 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 CORO1CQ9ULV4 474 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 VPS4AQ9UN37 437 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 MAP4K5Q9Y4K4 846 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PCDHGA11Q9Y5H2 935 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SLCO1B7G3V0H7 640 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TP73O15350 636 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SGTAO43765 313 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 KIF1CO43896 1103 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ZNF821O75541 412 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 RPSAP08865 295 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 CPN2P22792 545 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TBL3Q12788 808 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 FLOT2Q14254 428 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ERV3-1Q14264 604 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SF3A2Q15428 464 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ALG11Q2TAA5 492 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ALKBH2Q6NS38 261 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 TMEM207Q6UWW9 146 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 DGLUCYQ7Z3D6 616 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SYVN1Q86TM6 617 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 C10orf53Q8N6V4 93 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 GBP7Q8N8V2 638 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 OR8K5Q8NH50 307 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 SPPL2AQ8TCT8 520 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 ZNF480Q8WV37 535 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 RSC1A1Q92681 617 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 NEIL2Q969S2 332 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 UBE2E3Q969T4 207 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 AKTIPQ9H8T0 292 aa5.27□□□□□ -1.57
VPS13C-209ENST00000560637 MRM3Q9HC36 420 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 PNO1Q9NRX1 252 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 DDX18Q9NVP1 670 aaKnown RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 WSB2Q9NYS7 404 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-209ENST00000560637 MAGEB17A8MXT2 336 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 RFXANKO14593 260 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 CAPN5O15484 640 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 DYRK3O43781 588 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 TYROBPO43914 113 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 PCDH7O60245 1069 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SHOX2O60902 331 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SEC24DO94855 1032 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 THRAP10827 490 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 F3P13726 295 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 CD27P26842 260 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 CSNK1DP48730 415 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 RAB28P51157 221 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 AP1S2P56377 157 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 OR1D5P58170 312 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 RACK1P63244 317 aaKnown RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SH3BP2P78314 561 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SIGLEC14Q08ET2 396 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 GPR18Q14330 331 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 GAS6Q14393 721 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 KCNAB1Q14722 419 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SUZ12Q15022 739 aaKnown RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 UNC50Q53HI1 259 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 TOR1AIP1Q5JTV8 583 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 PLEKHS1Q5SXH7 462 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 ZNF678Q5SXM1 525 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 HENMT1Q5T8I9 393 aaKnown RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 ARHGAP40Q5TG30 622 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 RNF43Q68DV7 783 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 TNFAIP8L2Q6P589 184 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 CLEC4FQ8N1N0 589 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SFRP1Q8N474 314 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 ADCY4Q8NFM4 1077 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 ATXN2LQ8WWM7 1075 aaKnown RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 AURKBQ96GD4 344 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 PPP3R2Q96LZ3 170 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 BIRC8Q96P09 236 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SMAD5Q99717 465 aaKnown RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 HDAC8Q9BY41 377 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 CD244Q9BZW8 370 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 FANCEQ9HB96 536 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 ARL8BQ9NVJ2 186 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 GID8Q9NWU2 228 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 EHD3Q9NZN3 535 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 PSME2Q9UL46 239 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 FAF1Q9UNN5 650 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 WDR37Q9Y2I8 494 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SNX11Q9Y5W9 270 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 DNAJC13O75165 2243 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 A0A088AWK7 358 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 A0A1W2PPC4 97 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 BIRC5O15392 142 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 FZD6O60353 706 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 NME6O75414 186 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 AP2A2O94973 939 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 SYPP08247 313 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 FGF3P11487 239 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 CCNA2P20248 432 aa5.26□□□□□ -1.57
VPS13C-209ENST00000560637 ZNF10P21506 573 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-209ENST00000560637 PIK3R1P27986 724 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms