RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 RPA3P35244 121 aaPredicted RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 BDKRB1P46663 353 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 TNFSF10P50591 281 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 CASP6P55212 293 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 EIF3BP55884 814 aaKnown RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 ARF3P61204 181 aaPredicted RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 RBPJQ06330 500 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 DSG2Q14126 1118 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 ARHGAP19Q14CB8 494 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 OASLQ15646 514 aaKnown RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 PRTGQ2VWP7 1150 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 RNF187Q5TA31 235 aaPredicted RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 ABHD17BQ5VST6 288 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 MRNIPQ6NTE8 343 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 RAD9BQ6WBX8 426 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 LAPTM4BQ86VI4 370 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 DTWD1Q8N5C7 304 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 RNF10Q8N5U6 811 aaKnown RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 OTUD6BQ8N6M0 293 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 CSNK1A1LQ8N752 337 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 ACRBPQ8NEB7 543 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 OR9A1PQ8NGU1 263 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 BRIX1Q8TDN6 353 aaKnown RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 ATG4AQ8WYN0 398 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 SMPDL3AQ92484 453 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 PSMF1Q92530 271 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 RERGQ96A58 199 aaPredicted RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 MMABQ96EY8 250 aaPredicted RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 HES6Q96HZ4 224 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 TCF12Q99081 682 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 BAG1Q99933 345 aaPredicted RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 PLCD4Q9BRC7 762 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 ACAT2Q9BWD1 397 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 TGIF2Q9GZN2 237 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 IL22Q9GZX6 179 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 RNF32Q9H0A6 362 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 CHST11Q9NPF2 352 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 MKKSQ9NPJ1 570 aaPredicted RBP8.73□□□□□ -1.01
HDDC3-204ENST00000559834 FAM114A2Q9NRY5 505 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 PLA2G3Q9NZ20 509 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 STMN3Q9NZ72 180 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 TEKT2Q9UIF3 430 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 NFS1Q9Y697 457 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 PCM1Q15154 2024 aa8.73□□□□□ -1.01
HDDC3-204ENST00000559834 MYO7BQ6PIF6 2116 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 IGHV1-45A0A0A0MS14 117 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 TRGV8A0A0C4DH27 118 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 A0A1W2PPV9 198 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 A0A1W2PQ72 361 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 CCL21O00585 134 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 CCNDBP1O95273 360 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 MED26O95402 600 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 CATP04040 527 aaKnown RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 COX6A1P12074 109 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 CHRM3P20309 590 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 FMO4P31512 558 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 SOX11P35716 441 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 SLC26A3P40879 764 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 ZNF75DP51815 510 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 KCNK10P57789 538 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 SESN2P58004 480 aaPredicted RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 RELAQ04206 551 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 PRDX1Q06830 199 aaKnown RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 SNX1Q13596 522 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 FASTKQ14296 549 aaKnown RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 NDUFA9Q16795 377 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 LONRF1Q17RB8 773 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 CCSMST1Q4G0I0 132 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 LRRC8BQ6P9F7 803 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 MCEMP1Q8IX19 187 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 SIRT6Q8N6T7 355 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 C1orf54Q8WWF1 131 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 METTL21AQ8WXB1 218 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 C10orf90Q96M02 699 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 TAAR6Q96RI8 345 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 EBNA1BP2Q99848 306 aaKnown RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 TUBB6Q9BUF5 446 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 TSGA10Q9BZW7 698 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 UNKQ9C0B0 810 aaKnown RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 EIF2B3Q9NR50 452 aaKnown RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 TREX1Q9NSU2 369 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 ABI3Q9P2A4 366 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 MARCH4Q9P2E8 410 aaPredicted RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 STOX2Q9P2F5 926 aaPredicted RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 SEC14L3Q9UDX4 400 aa8.72□□□□□ -1.01
HDDC3-204ENST00000559834 UTP20O75691 2785 aaKnown RBP8.72□□□□□ -1.01
HDDC3-204ENST00000559834 LOC102723996A0A087X1L8 192 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 E5RI56 91 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 PRAMEF2O60811 474 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 UNC5CO95185 931 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 VAPBO95292 243 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 MLYCDO95822 493 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 WDPCPO95876 746 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 ESR1P03372 595 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 PRF1P14222 555 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 ETS1P14921 441 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 NMBRP28336 390 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 RPL22P35268 128 aaKnown RBP8.71□□□□□ -1.02
HDDC3-204ENST00000559834 PTGER4P35408 488 aa8.71□□□□□ -1.02
HDDC3-204ENST00000559834 AVPR1BP47901 424 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms