RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ACKR1Q16570 336 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 RBBP7Q16576 425 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CCDC40Q4G0X9 1142 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 TDRD12Q587J7 1177 aaKnown RBP2.94□□□□□ -1.94
TRAV28-201ENST00000557548 HSP90AA5PQ58FG0 334 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 EFHC1Q5JVL4 640 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 SPDYCQ5MJ68 293 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CCNYL2Q5T2Q4 361 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 OR6B2Q6IFH4 312 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 GTF2H2CQ6P1K8 395 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 FAM122CQ6P4D5 195 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 RHBDF2Q6PJF5 856 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 GFRALQ6UXV0 394 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 LINGO4Q6UY18 593 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 PACS1Q6VY07 963 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 WDR88Q6ZMY6 472 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CCDC73Q6ZRK6 1079 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 COLCA1Q6ZS62 124 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 RBM43Q6ZSC3 357 aaKnown RBP2.94□□□□□ -1.94
TRAV28-201ENST00000557548 ASB18Q6ZVZ8 466 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 MARK2Q7KZI7 788 aaKnown RBP2.94□□□□□ -1.94
TRAV28-201ENST00000557548 ANKRD33Q7Z3H0 272 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 ADAMTSL2Q86TH1 951 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 TMEM219Q86XT9 240 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 TMEM126BQ8IUX1 230 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 TMEM139Q8IV31 216 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 ADHFE1Q8IWW8 467 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CDK20Q8IZL9 346 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 LGI2Q8N0V4 545 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 PRR26Q8N8Z3 221 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CCDC63Q8NA47 563 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 OR10Q1Q8NGQ4 319 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CCDC110Q8TBZ0 833 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 WBP2Q969T9 261 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 TMEM186Q96B77 213 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 BICD1Q96G01 975 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CFAP36Q96G28 342 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 SCMH1Q96GD3 660 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CFAP53Q96M91 514 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 NSMCE2Q96MF7 247 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 KCNK16Q96T55 309 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 C17orf62Q9BQA9 187 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 ZNF577Q9BSK1 485 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 C1QTNF7Q9BXJ2 289 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 IDI2Q9BXS1 227 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 NYXQ9GZU5 481 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CSTL1Q9H114 145 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 NAPBQ9H115 298 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 DPH5Q9H2P9 285 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 RWDD1Q9H446 243 aaPredicted RBP2.94□□□□□ -1.94
TRAV28-201ENST00000557548 KCNMB3Q9NPA1 279 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 NGBQ9NPG2 151 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 OLFML3Q9NRN5 406 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 MRPL17Q9NRX2 175 aaKnown RBP2.94□□□□□ -1.94
TRAV28-201ENST00000557548 ZCCHC3Q9NUD5 404 aaKnown RBP2.94□□□□□ -1.94
TRAV28-201ENST00000557548 TMEM30AQ9NV96 361 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 ZNF224Q9NZL3 707 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 PKD2L2Q9NZM6 624 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 UBQLN2Q9UHD9 624 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 XPO7Q9UIA9 1087 aaKnown RBP2.94□□□□□ -1.94
TRAV28-201ENST00000557548 CCPG1Q9ULG6 757 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 NUDCQ9Y266 331 aa2.94□□□□□ -1.94
TRAV28-201ENST00000557548 A0A0G2JNG1 304 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 ARHGAP42A6NI28 874 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 KPNA7A9QM74 516 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 TMEM150CB9EJG8 249 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 ARPC2O15144 300 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 RNASEH1O60930 286 aaKnown RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 NOL3O60936 208 aaKnown RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 PRDM1O75626 825 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 AKR7A3O95154 331 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 SKILP12757 684 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 CPA3P15088 417 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 ARRB2P32121 409 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 AHRP35869 848 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 USP8P40818 1118 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 ARCN1P48444 511 aaKnown RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 HNRNPFP52597 415 aaKnown RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 KCNJ10P78508 379 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 RELQ04864 619 aaPredicted RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 EEF1A2Q05639 463 aaKnown RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 CACNG1Q06432 222 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 SRSF4Q08170 494 aaKnown RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 Q0VFX4 171 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 PPP1R8Q12972 351 aaKnown RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 LCP2Q13094 533 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 MYBPHQ13203 477 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 KIR2DS5Q14953 304 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 CEBPEQ15744 281 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 EZH2Q15910 746 aaKnown RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 SRSF7Q16629 238 aaKnown RBP eCLIP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 PHKG1Q16816 387 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 ODF4Q2M2E3 257 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 ANKDD1AQ495B1 522 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 MTX3Q5HYI7 312 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 CYP4A22Q5TCH4 519 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 MORN5Q5VZ52 161 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 LYSMD4Q5XG99 296 aa2.93□□□□□ -1.94
TRAV28-201ENST00000557548 ZNF770Q6IQ21 691 aaPredicted RBP2.93□□□□□ -1.94
TRAV28-201ENST00000557548 TRNP1Q6NT89 227 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms