RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	C10orf90	Q96M02	699 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	ZFYVE21	Q9BQ24	234 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	TGIF2	Q9GZN2	237 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	ZNF700	Q9H0M5	742 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	C14orf105	Q9NVL8	296 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	SLC2A6	Q9UGQ3	507 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	TEKT2	Q9UIF3	430 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	RIMKLB	Q9ULI2	386 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	F8	P00451	2351 aa		12.03	□□□□□ -0.48
SHMT2-223	ENST00000556689	ZFHX3	Q15911	3703 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	LOC102723996	A0A087X1L8	192 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	OR2A25	A4D2G3	310 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	GOLGA6L9	A6NEM1	432 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689		H0YGG7	62 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	FFAR3	O14843	346 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	KPNA5	O15131	536 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	GPR42	O15529	346 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	WISP2	O76076	250 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	CLDN14	O95500	239 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	ANXA5	P08758	320 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	SLC26A3	P40879	764 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	KIR3DL1	P43629	444 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	ARF3	P61204	181 aa	Predicted RBP	12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	PRAME	P78395	509 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZNF33B	Q06732	778 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	CDH17	Q12864	832 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	SPA17	Q15506	151 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	TESK1	Q15569	626 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	KRTCAP3	Q53RY4	240 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZNF766	Q5HY98	468 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	PTRHD1	Q6GMV3	140 aa	Known RBP	12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	AADACL2	Q6P093	401 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	TMEM205	Q6UW68	189 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	TAB3	Q8N5C8	712 aa	Predicted RBP	12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	SKA2	Q8WVK7	121 aa	Predicted RBP	12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	MMAB	Q96EY8	250 aa	Predicted RBP	12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	CALR3	Q96L12	384 aa	Known RBP	12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	IMMP1L	Q96LU5	166 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	FOPNL	Q96NB1	174 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	DPH7	Q9BTV6	452 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	TUBB6	Q9BUF5	446 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	MKKS	Q9NPJ1	570 aa	Predicted RBP	12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	TINAG	Q9UJW2	476 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689	ANAPC5	Q9UJX4	755 aa		12.02	□□□□□ -0.49
SHMT2-223	ENST00000556689		A0A1W2PPV9	198 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689		A8MUI8	341 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	C19orf84	I3L1E1	186 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	PRMT5	O14744	637 aa	Predicted RBP	12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	NRP2	O60462	931 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	VPS26A	O75436	327 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	IPO7	O95373	1038 aa	Known RBP	12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	MLYCD	O95822	493 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	ADRA1D	P25100	572 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	CMPK1	P30085	196 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	CCNF	P41002	786 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	NAP1L1	P55209	391 aa	Known RBP	12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	KRTAP10-9	P60411	292 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	PMP22	Q01453	160 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	ACVR1	Q04771	509 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	SEMA3A	Q14563	771 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	PCOLCE	Q15113	449 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	CCSMST1	Q4G0I0	132 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	AARS2	Q5JTZ9	985 aa	Known RBP	12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	GARNL3	Q5VVW2	1013 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	LRRC8B	Q6P9F7	803 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	SPNS3	Q6ZMD2	512 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689		Q6ZPB1	254 aa	Predicted RBP	12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	NEK10	Q6ZWH5	1172 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZNF534	Q76KX8	674 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	SPPL2C	Q8IUH8	684 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	CEP97	Q8IW35	865 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	CSNK1A1L	Q8N752	337 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	THAP3	Q8WTV1	239 aa	Predicted RBP	12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	C14orf79	Q96F83	325 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	MAGED4	Q96JG8	741 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZNF778	Q96MU6	729 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	PANX3	Q96QZ0	392 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	SPOCK3	Q9BQ16	436 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	PLCD4	Q9BRC7	762 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	ACAT2	Q9BWD1	397 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	GPAM	Q9HCL2	828 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	MKL2	Q9ULH7	1088 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	ZNF835	Q9Y2P0	537 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	PCDHGB6	Q9Y5F9	930 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	NFS1	Q9Y697	457 aa		12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	SNRNP200	O75643	2136 aa	Known RBP	12.01	□□□□□ -0.49
SHMT2-223	ENST00000556689	TACC2	O95359	2948 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	KRT87P	A6NCN2	255 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	RCCD1	A6NED2	376 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	ERI2	A8K979	691 aa	Known RBP	12	□□□□□ -0.49
SHMT2-223	ENST00000556689	FAM227A	F5H4B4	570 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	TTI1	O43156	1089 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	PHF2	O75151	1096 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	BDKRB1	P46663	353 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	TTPA	P49638	278 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	GDF10	P55107	478 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	YBX1	P67809	324 aa	Known RBP	12	□□□□□ -0.49
SHMT2-223	ENST00000556689	FASTK	Q14296	549 aa	Known RBP	12	□□□□□ -0.49
SHMT2-223	ENST00000556689	CDSN	Q15517	529 aa		12	□□□□□ -0.49
SHMT2-223	ENST00000556689	KRTAP21-3	Q3LHN1	58 aa		12	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms