RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 HAO2Q9NYQ3 351 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 RNF150Q9ULK6 438 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 PA2G4Q9UQ80 394 aaKnown RBP3.14□□□□□ -1.91
SCFD1-216ENST00000555550 CHKBQ9Y259 395 aa3.14□□□□□ -1.91
SCFD1-216ENST00000555550 PI4K2BG5E9Z4 385 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 H0YAE9 185 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 TEX28O15482 410 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 IGHV3-13P01766 116 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 RAB40ALP0C0E4 278 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 PTGER3P43115 390 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 PGFP49763 221 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 KRTAP10-1P60331 282 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 HNRNPKP61978 463 aaKnown RBP eCLIP3.13□□□□□ -1.91
SCFD1-216ENST00000555550 FRRS1Q6ZNA5 592 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 MOB3AQ96BX8 217 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 SLC45A3Q96JT2 553 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 FAM71F1Q96KD3 344 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-216ENST00000555550 ZNF830Q96NB3 372 aaPredicted RBP3.13□□□□□ -1.91
SCFD1-216ENST00000555550 CCDC68Q9H2F9 335 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 RPS6KA6Q9UK32 745 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 TP53TG3Q9ULZ0 132 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 WDR83OSQ9Y284 106 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 RPS6KL1Q9Y6S9 549 aa3.13□□□□□ -1.91
SCFD1-216ENST00000555550 hCG_1809904A0A1W2PP81 198 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 A0A1W2PPE2 198 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 A0A1W2PR64 198 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 A8MU10 97 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 EPM2AB3EWF7 344 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 THEGLP0DJG4 465 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 PDHA2P29803 388 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 OXTRP30559 389 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 PTGER4P35408 488 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 CAPGP40121 348 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 ALDH3A2P51648 485 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 EIF5P55010 431 aaKnown RBP3.12□□□□□ -1.91
SCFD1-216ENST00000555550 SGCGQ13326 291 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 CUL3Q13618 768 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 SIM2Q14190 667 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-216ENST00000555550 TMEM132DQ14C87 1099 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 EXT1Q16394 746 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 HYIQ5T013 277 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 PRR27Q6MZM9 219 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 CAMKMTQ7Z624 323 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 ZER1Q7Z7L7 766 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 CATSPERDQ86XM0 798 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 KLHDC1Q8N7A1 406 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 OR5T2Q8NGG2 359 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 OR10Q1Q8NGQ4 319 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 LRRC15Q8TF66 581 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 SECISBP2LQ93073 1101 aaKnown RBP3.12□□□□□ -1.91
SCFD1-216ENST00000555550 DGAT2Q96PD7 388 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 APOL6Q9BWW8 343 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 PRMT7Q9NVM4 692 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-216ENST00000555550 NSMCE4AQ9NXX6 385 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 IL17BQ9UHF5 180 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 RARRES3Q9UL19 164 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 MAGED1Q9Y5V3 778 aaPredicted RBP3.12□□□□□ -1.91
SCFD1-216ENST00000555550 SNX8Q9Y5X2 465 aa3.12□□□□□ -1.91
SCFD1-216ENST00000555550 LOC105371242A0A075B767 164 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 A0A087WUV0 522 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 O00370 1275 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 TFECO14948 347 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 ERAL1O75616 437 aaKnown RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 GFPT2O94808 682 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 SOX3P41225 446 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 VAMP7P51809 220 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 TRAP1Q12931 704 aaKnown RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 ITGA7Q13683 1181 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 TRIM29Q14134 588 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 PTPN14Q15678 1187 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 LETM2Q2VYF4 491 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 BMP2KLQ5H9B9 411 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 LCE1BQ5T7P3 118 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 OR4A47Q6IF82 309 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 FAM198BQ6UWH4 519 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 LCLAT1Q6UWP7 414 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 LEKR1Q6ZMV7 388 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 ZBTB49Q6ZSB9 765 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 RYBPQ8N488 228 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 AVL9Q8NBF6 648 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 NOA1Q8NC60 698 aaKnown RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 METTL21AQ8WXB1 218 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 ATXN7L3BQ96GX2 97 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 PUS3Q9BZE2 481 aaKnown RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 HOXD1Q9GZZ0 328 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 NOL11Q9H8H0 719 aaKnown RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 ANKZF1Q9H8Y5 726 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 CNOT10Q9H9A5 744 aaKnown RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 GPN1Q9HCN4 374 aaPredicted RBP3.11□□□□□ -1.91
SCFD1-216ENST00000555550 SELENOKQ9Y6D0 94 aa3.11□□□□□ -1.91
SCFD1-216ENST00000555550 ABCA7Q8IZY2 2146 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 A0A1W2PPQ1 181 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 A8MXK9 166 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 TRIM77I1YAP6 450 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 ACSL3O95573 720 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 ATP1B1P05026 303 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 PCGF2P35227 344 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 NNMTP40261 264 aa3.1□□□□□ -1.91
SCFD1-216ENST00000555550 LHX1P48742 406 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms