RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	MAP2K7	O14733	419 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	DSCR3	O14972	297 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	KCNAB3	O43448	404 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	TRIAP1	O43715	76 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	EXTL3	O43909	919 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ATP6V1G1	O75348	118 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	JRK	O75564	520 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	KRT36	O76013	467 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	VNN1	O95497	513 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	GPANK1	O95872	356 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ERBB2	P04626	1255 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	MYZAP	P0CAP1	466 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SLC2A3	P11169	496 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PRPS2	P11908	318 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PRKACA	P17612	351 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	CEBPB	P17676	345 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	IER3	P46695	156 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	NPBWR1	P48145	328 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	CEBPD	P49716	269 aa	Predicted RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	CLDN2	P57739	230 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PDE1B	Q01064	536 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	DNASE1L3	Q13609	305 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SOWAHA	Q2M3V2	549 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	FAM174B	Q3ZCQ3	159 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PDLIM3	Q53GG5	364 aa	Predicted RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	LRRC66	Q68CR7	880 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF772	Q68DY9	489 aa	Predicted RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	KATNAL2	Q8IYT4	538 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	RNF10	Q8N5U6	811 aa	Known RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ZBTB2	Q8N680	514 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	DNAAF3	Q8N9W5	541 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	C7orf57	Q8NEG2	295 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF397	Q8NF99	534 aa	Predicted RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	OR9K2	Q8NGE7	335 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PAQR8	Q8TEZ7	354 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	WIPF2	Q8TF74	440 aa	Predicted RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ATL1	Q8WXF7	558 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SOCS4	Q8WXH5	440 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	KIAA1143	Q96AT1	154 aa	Predicted RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	FYTTD1	Q96QD9	318 aa	Known RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	OR1F2P	Q96R84	312 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	CHP1	Q99653	195 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	TMEM47	Q9BQJ4	181 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ATG101	Q9BSB4	218 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	DPCD	Q9BVM2	203 aa	Predicted RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	RHBG	Q9H310	441 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	AZI2	Q9H6S1	392 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PSTPIP2	Q9H939	334 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	MED20	Q9H944	212 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	WDR76	Q9H967	626 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SAP30L	Q9HAJ7	183 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	SLC28A3	Q9HAS3	691 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	NEK6	Q9HC98	313 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	TRPC7	Q9HCX4	862 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	TFCP2L1	Q9NZI6	479 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	TRPM5	Q9NZQ8	1165 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	STX18	Q9P2W9	335 aa	Known RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	WNT16	Q9UBV4	365 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	DBNL	Q9UJU6	430 aa	Known RBP	4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PLCL2	Q9UPR0	1127 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	DHDH	Q9UQ10	334 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	FANCD2	Q9BXW9	1451 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ERCC6L2	Q5T890	1561 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	PEG3	Q9GZU2	1588 aa		4.03	□□□□□ -1.76
USP44-208	ENST00000552440	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440		A8MUI8	341 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	PSMD11	O00231	422 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CES2	O00748	559 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	SAP30	O75446	220 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RPS6KA4	O75676	772 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CRTAP	O75718	401 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CBR3	O75828	277 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	NUDT3	O95989	172 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ELANE	P08246	267 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	MMP10	P09238	476 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CYP2B6	P20813	491 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	HLA-F	P30511	346 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	HOXC9	P31274	260 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ADRA1A	P35348	466 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	DLST	P36957	453 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FNTA	P49354	379 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RGS7	P49802	495 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	CCNH	P51946	323 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RABGGTB	P53611	331 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RPS7	P62081	194 aa	Known RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	XIAP	P98170	497 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	BST1	Q10588	318 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	GRIK3	Q13003	919 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	ZNF177	Q13360	481 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	HIKESHI	Q53FT3	197 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	AGBL2	Q5U5Z8	902 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FBXO46	Q6PJ61	603 aa	Predicted RBP	4.02	□□□□□ -1.77
USP44-208	ENST00000552440	FOXR2	Q6PJQ5	311 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	LCTL	Q6UWM7	567 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	KDM7A	Q6ZMT4	941 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	QSOX2	Q6ZRP7	698 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	LRRC55	Q6ZSA7	311 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	RHOU	Q7L0Q8	258 aa		4.02	□□□□□ -1.77
USP44-208	ENST00000552440	TMEM126B	Q8IUX1	230 aa		4.02	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms