RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PFDN6O15212 129 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 ZG16O60844 167 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 VPS26AO75436 327 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 JRKO75564 520 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 COX6A1P12074 109 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 CXCR2P25025 360 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 NPY2RP49146 381 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 ARG2P78540 354 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 RELAQ04206 551 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 CCSMST1Q4G0I0 132 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 RNF187Q5TA31 235 aaPredicted RBP12.24□□□□□ -0.45
PTCH1-218ENST00000548945 GARNL3Q5VVW2 1013 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 ARMC3Q5W041 872 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 FBXO42Q6P3S6 717 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 CNSTQ6PJW8 725 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 TMEM139Q8IV31 216 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 DTWD1Q8N5C7 304 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 CATSPER1Q8NEC5 780 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 OR1N1Q8NGS0 311 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 SMPDL3AQ92484 453 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 PSMF1Q92530 271 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 NR4A3Q92570 626 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 MARVELD3Q96A59 401 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 BIRC8Q96P09 236 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 TCF12Q99081 682 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 PLCD4Q9BRC7 762 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 DPH7Q9BTV6 452 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 TGIF2Q9GZN2 237 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 RNF32Q9H0A6 362 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 RUBCNLQ9H714 662 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 RIC8BQ9NVN3 520 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 UTP6Q9NYH9 597 aaKnown RBP12.24□□□□□ -0.45
PTCH1-218ENST00000548945 BFARQ9NZS9 450 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 CAPN6Q9Y6Q1 641 aa12.24□□□□□ -0.45
PTCH1-218ENST00000548945 ADGRG4Q8IZF6 3080 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 IGHV1-45A0A0A0MS14 117 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 H0YGG7 62 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 MYO1CO00159 1063 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 TXNDC9O14530 226 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 NRDCO43847 1150 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 BMP10O95393 424 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 ESR1P03372 595 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 EIF2S1P05198 315 aaKnown RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 ICAM2P13598 275 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 PKMP14618 531 aaKnown RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 ETS1P14921 441 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 HSD17B2P37059 387 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 SLC26A3P40879 764 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 TDGF1P3P51864 188 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 EMP2P54851 167 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 EIF3BP55884 814 aaKnown RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 SESN2P58004 480 aaPredicted RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 ARF3P61204 181 aaPredicted RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 TYSND1Q2T9J0 566 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 ANKRD20A4Q4UJ75 823 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 VWA2Q5GFL6 755 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 CTSL3PQ5NE16 218 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 MRNIPQ6NTE8 343 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 DRICH1Q6PGQ1 229 aaPredicted RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 SDCCAG8Q86SQ7 713 aaPredicted RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 PAQR7Q86WK9 346 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 PRSS58Q8IYP2 241 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 OR9A1PQ8NGU1 263 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 C1orf54Q8WWF1 131 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 LPGAT1Q92604 370 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 C8orf44Q96CB5 159 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 CABS1Q96KC9 395 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 MESP1Q9BRJ9 268 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 KIFC1Q9BW19 673 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 MRPS30Q9NP92 439 aaKnown RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 MKKSQ9NPJ1 570 aaPredicted RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 FAM114A2Q9NRY5 505 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 TRPC4Q9UBN4 977 aa12.23□□□□□ -0.45
PTCH1-218ENST00000548945 RUVBL2Q9Y230 463 aaKnown RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 DRG1Q9Y295 367 aaKnown RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 MRPS2Q9Y399 296 aaKnown RBP12.23□□□□□ -0.45
PTCH1-218ENST00000548945 F8P00451 2351 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 CACNA1CQ13936 2221 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 LOC102723996A0A087X1L8 192 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 ZNF839A8K0R7 811 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 NRP2O60462 931 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 PSIP1O75475 530 aaKnown RBP12.22□□□□□ -0.45
PTCH1-218ENST00000548945 CCNDBP1O95273 360 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 CYC1P08574 325 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 MYBL2P10244 700 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 ARNTP27540 789 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 NMBRP28336 390 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 RPA3P35244 121 aaPredicted RBP12.22□□□□□ -0.45
PTCH1-218ENST00000548945 RPL22P35268 128 aaKnown RBP12.22□□□□□ -0.45
PTCH1-218ENST00000548945 CDK16Q00536 496 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 ART3Q13508 389 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 FASTKQ14296 549 aaKnown RBP12.22□□□□□ -0.45
PTCH1-218ENST00000548945 CCNG2Q16589 344 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.22□□□□□ -0.45
PTCH1-218ENST00000548945 LAPTM4BQ86VI4 370 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 FJX1Q86VR8 437 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 ARHGEF39Q8N4T4 335 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 CSNK1A1LQ8N752 337 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 AMER3Q8N944 861 aa12.22□□□□□ -0.45
PTCH1-218ENST00000548945 DNAJB8Q8NHS0 232 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms