RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	UGDH	O60701	494 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	CLDN9	O95484	217 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	CHEK2	O96017	543 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	C1GALT1C1L	P0DN25	315 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	HGF	P14210	728 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	NPPB	P16860	134 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	CD1C	P29017	333 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	HNF4A	P41235	474 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	MLLT3	P42568	568 aa	Predicted RBP	11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	ACADVL	P49748	655 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	GFER	P55789	205 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	PHEX	P78562	749 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	E2F1	Q01094	437 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	GALNT1	Q10472	559 aa	Predicted RBP	11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	BST1	Q10588	318 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	TRIP6	Q15654	476 aa	Known RBP	11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	TUBB8	Q3ZCM7	444 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	SNAP47	Q5SQN1	464 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	CACHD1	Q5VU97	1274 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	LIPJ	Q5W064	366 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	TMEM71	Q6P5X7	295 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	WDR74	Q6RFH5	385 aa	Predicted RBP	11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	NXPE4	Q6UWF7	544 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	USP53	Q70EK8	1073 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	CUZD1	Q86UP6	607 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	TRIM73	Q86UV7	250 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	CRLF3	Q8IUI8	442 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	CARF	Q8N187	725 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	DEFB124	Q8NES8	71 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	N4BP2L2	Q92802	583 aa	Predicted RBP	11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	UBE2E3	Q969T4	207 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	REPS1	Q96D71	796 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	OR4K3	Q96R72	315 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	ZNF382	Q96SR6	550 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	DPH7	Q9BTV6	452 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	NTMT1	Q9BV86	223 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	SHCBP1L	Q9BZQ2	653 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	SEMA6C	Q9H3T2	930 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	ZBTB26	Q9HCK0	441 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	C1GALT1	Q9NS00	363 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	TMEM184C	Q9NVA4	438 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	FAM53C	Q9NYF3	392 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	EPHA6	Q9UF33	1036 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	SNX7	Q9UNH6	387 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658	FIS1	Q9Y3D6	152 aa		11.45	□□□□□ -0.58
DDB1-223	ENST00000543658		H7BY64	318 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	PRICKLE3	O43900	615 aa	Predicted RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	CBFA2T3	O75081	653 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	LYPLA1	O75608	230 aa	Predicted RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	OR4F21	O95013	312 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	ENO1	P06733	434 aa	Known RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	VIM	P08670	466 aa	Known RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	CDK4	P11802	303 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	MAG	P20916	626 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	CSF2RB	P32927	897 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	IFT88	Q13099	833 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	SLBP	Q14493	270 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	ZXDC	Q2QGD7	858 aa	Predicted RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	ARL13A	Q5H913	290 aa	Predicted RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	SH2D4B	Q5SQS7	431 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	CATSPERE	Q5SY80	951 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	TMTC4	Q5T4D3	741 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	KIAA1614	Q5VZ46	1190 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	ATG9B	Q674R7	924 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	GRHL2	Q6ISB3	625 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	FIGLA	Q6QHK4	219 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	PIP4P1	Q86T03	277 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	DCBLD1	Q8N8Z6	715 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	C19orf47	Q8N9M1	422 aa	Known RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	OR4F6	Q8NGB9	312 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	OR4D9	Q8NGE8	314 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	OR52B6	Q8NGF0	335 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	AGR3	Q8TD06	166 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	AGAP11	Q8TF27	550 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	CCT6B	Q92526	530 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	ZUFSP	Q96AP4	578 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	GRAMD1A	Q96CP6	724 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	MOCOS	Q96EN8	888 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	PRAP1	Q96NZ9	151 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	CDK15	Q96Q40	435 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	MAP3K3	Q99759	626 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	NUDT22	Q9BRQ3	303 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	ILKAP	Q9H0C8	392 aa	Predicted RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	EHD1	Q9H4M9	534 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	SLC6A20	Q9NP91	592 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	CUEDC1	Q9NWM3	386 aa	Predicted RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	TRPS1	Q9UHF7	1281 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	SNX6	Q9UNH7	406 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	APOBEC2	Q9Y235	224 aa	Known RBP	11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	RAP2C	Q9Y3L5	183 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	PCDHGA1	Q9Y5H4	931 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658	MYO15A	Q9UKN7	3530 aa		11.44	□□□□□ -0.58
DDB1-223	ENST00000543658		A0A1W2PQM1	296 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658		A8MU76	341 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	TCP11X1	B4DZS4	312 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658		D6RAR5	112 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	OR7A17	O14581	309 aa		11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	ZBTB11	O95625	1053 aa	Predicted RBP	11.43	□□□□□ -0.58
DDB1-223	ENST00000543658	ESRRB	O95718	433 aa		11.43	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms