RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 CCDC59Q9P031 241 aaKnown RBP13.34□□□□□ -0.27
VPS33A-208ENST00000543633 PDP1Q9P0J1 537 aaPredicted RBP13.34□□□□□ -0.27
VPS33A-208ENST00000543633 CRLS1Q9UJA2 301 aa13.34□□□□□ -0.27
VPS33A-208ENST00000543633 TSR3Q9UJK0 312 aaKnown RBP13.34□□□□□ -0.27
VPS33A-208ENST00000543633 MAPRE3Q9UPY8 281 aa13.34□□□□□ -0.27
VPS33A-208ENST00000543633 SAMHD1Q9Y3Z3 626 aaKnown RBP13.34□□□□□ -0.27
VPS33A-208ENST00000543633 PRSS21Q9Y6M0 314 aa13.34□□□□□ -0.27
VPS33A-208ENST00000543633 GLYATL1P3A0A0U1RQE8 302 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 ZNF840PA6NDX5 716 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 COCHO43405 550 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 WBP4O75554 376 aaKnown RBP13.33□□□□□ -0.28
VPS33A-208ENST00000543633 GJB5O95377 273 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 TRBC1P01850 177 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 KLKB1P03952 638 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 C8GP07360 202 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 EPORP19235 508 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 PPIBP23284 216 aaKnown RBP13.33□□□□□ -0.28
VPS33A-208ENST00000543633 SPAM1P38567 509 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 CDKN2CP42773 168 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 ALDH7A1P49419 539 aaKnown RBP13.33□□□□□ -0.28
VPS33A-208ENST00000543633 HNMTP50135 292 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 NPRL3Q12980 569 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 DUSP4Q13115 394 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 INAVAQ3KP66 663 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 ZNF404Q494X3 552 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 TMEM236Q5W0B7 351 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 TMEM53Q6P2H8 277 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 ZNF551Q7Z340 670 aaPredicted RBP13.33□□□□□ -0.28
VPS33A-208ENST00000543633 NXPE1Q8N323 547 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 DCAF4L2Q8NA75 395 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 FBXO22Q8NEZ5 403 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 RAET1EQ8TD07 263 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 CHAC2Q8WUX2 184 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 BARD1Q99728 777 aaKnown RBP13.33□□□□□ -0.28
VPS33A-208ENST00000543633 NXF2Q9GZY0 626 aaKnown RBP13.33□□□□□ -0.28
VPS33A-208ENST00000543633 TMEM165Q9HC07 324 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 CORO2BQ9UQ03 480 aa13.33□□□□□ -0.28
VPS33A-208ENST00000543633 METTL15A6NJ78 407 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 MYO1GB0I1T2 1018 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 CLIC1O00299 241 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 MAN1A2O60476 641 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 KCNK5O95279 499 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PRAMEF12O95522 483 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 GSNP06396 782 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 CYP4B1P13584 511 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 AMD1P17707 334 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 ITGB6P18564 788 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PTX3P26022 381 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 NSG1P42857 185 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 CSTF3Q12996 717 aaKnown RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 SP140Q13342 867 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 CAMK2GQ13555 558 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 KRR1Q13601 381 aaKnown RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 ARHGEF7Q14155 803 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 KCNA10Q16322 511 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PGS1Q32NB8 556 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 FBXO43Q4G163 708 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 FUT10Q6P4F1 479 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 USP43Q70EL4 1123 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 SLC22A16Q86VW1 577 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 NAT16Q8N8M0 369 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 B3GALT6Q96L58 329 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 TSSK3Q96PN8 268 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 DCSTAMPQ9H295 470 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 IL26Q9NPH9 171 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 MARCH5Q9NX47 278 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 GPRC5BQ9NZH0 403 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 OR51B4Q9Y5P0 310 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PTTG1O95997 202 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 MPC1LP0DKB6 136 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 ALDH4A1P30038 563 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 SLC6A12P48065 614 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 TUFMP49411 452 aaKnown RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 VLDLRP98155 873 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PTPRRQ15256 657 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 CPSF6Q16630 551 aaKnown RBP eCLIP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 CDKN3Q16667 212 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 TOR1AIP1Q5JTV8 583 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 ZCCHC8Q6NZY4 707 aaKnown RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 RSPO2Q6UXX9 243 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 LINGO4Q6UY18 593 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PAGE2Q7Z2X7 111 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PTOV1Q86YD1 416 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 AMER2Q8N7J2 671 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 ATG16L2Q8NAA4 619 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PCSK9Q8NBP7 692 aaKnown RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 HJURPQ8NCD3 748 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 KBTBD8Q8NFY9 601 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 OR8J2Q8NGG1 315 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 HPS1Q92902 700 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 MYDGFQ969H8 173 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 CCDC97Q96F63 343 aaPredicted RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 HSH2DQ96JZ2 352 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 ALOXE3Q9BYJ1 711 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 FKBP14Q9NWM8 211 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 THUMPD1Q9NXG2 353 aaKnown RBP13.32□□□□□ -0.28
VPS33A-208ENST00000543633 PLXNB3Q9ULL4 1909 aa13.32□□□□□ -0.28
VPS33A-208ENST00000543633 A8MVJ9 347 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 FPGTO14772 594 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 SLC16A5O15375 505 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms