RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 PABPC1P11940 636 aaKnown RBP12.16□□□□□ -0.46
RNF4-222ENST00000541204 FUT4P22083 530 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 IGFBP5P24593 272 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 CCR7P32248 378 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 CTNNB1P35222 781 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 ADPRMQ3LIE5 342 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 CARD16Q5EG05 197 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 TRIM46Q7Z4K8 759 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 CYP4Z1Q86W10 505 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 BEND7Q8N7W2 519 aaPredicted RBP12.16□□□□□ -0.46
RNF4-222ENST00000541204 GLMNQ92990 594 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 ULK4Q96C45 1275 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 PYURFQ96I23 114 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 RHNO1Q9BSD3 238 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 HTATIP2Q9BUP3 242 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 TRIT1Q9H3H1 467 aaKnown RBP12.16□□□□□ -0.46
RNF4-222ENST00000541204 RIBC2Q9H4K1 309 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 MAGIXQ9H6Y5 334 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 AKIP1Q9NQ31 210 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 TDP1Q9NUW8 608 aa12.16□□□□□ -0.46
RNF4-222ENST00000541204 TRBV5-4A0A0C4DH59 114 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 FAM220BPB1ANY3 271 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 MANBAO00462 879 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 GRM6O15303 877 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 RHOP08100 348 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CCDC159P0C7I6 412 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 RPS3P23396 243 aaKnown RBP eCLIP12.15□□□□□ -0.46
RNF4-222ENST00000541204 CDKN2CP42773 168 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 GZMMP51124 257 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 VBP1P61758 197 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CREMQ03060 361 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 DGCR6Q14129 220 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 OXA1LQ15070 435 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CPSF6Q16630 551 aaKnown RBP eCLIP12.15□□□□□ -0.46
RNF4-222ENST00000541204 ATG9BQ674R7 924 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 TMEM215Q68D42 235 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 LAIR1Q6GTX8 287 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 SERPINA13PQ6UXR4 307 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CCDC81Q6ZN84 652 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 FKBP9P1Q75LS8 142 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 B3GNT8Q7Z7M8 397 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CALHM3Q86XJ0 350 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 HIPK1Q86Z02 1210 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 ZDHHC21Q8IVQ6 265 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 RORBQ92753 470 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 LMLNQ96KR4 655 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CPPED1Q9BRF8 314 aaPredicted RBP12.15□□□□□ -0.46
RNF4-222ENST00000541204 PCDH12Q9NPG4 1184 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 SERHLQ9NQF3 203 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 C1orf109Q9NX04 203 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 ARL15Q9NXU5 204 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 HS3ST2Q9Y278 367 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 DLGAP4Q9Y2H0 992 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 TTC34A8MYJ7 566 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 GABARAPO95166 117 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 ZNF682O95780 498 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 C1QCP02747 245 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 C1SP09871 688 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 EPCAMP16422 314 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CD6P30203 668 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CSNK1DP48730 415 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 IFITM3Q01628 133 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 GTF2H3Q13889 308 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 NPTX1Q15818 432 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CPZQ66K79 652 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 CEP68Q76N32 757 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 VRK3Q8IV63 474 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 PLPP6Q8IY26 295 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 SLC22A15Q8IZD6 547 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 IRF7Q92985 503 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 EMILIN2Q9BXX0 1053 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 ALOXE3Q9BYJ1 711 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 ACPTQ9BZG2 426 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 ABCG2Q9UNQ0 655 aa12.15□□□□□ -0.46
RNF4-222ENST00000541204 M0R3G1 203 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 DNAJB5O75953 348 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 DIRAS1O95057 198 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 POP4O95707 220 aaKnown RBP12.14□□□□□ -0.47
RNF4-222ENST00000541204 EBLN1P0CF75 366 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 EPB42P16452 691 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 IRS1P35568 1242 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 NSG1P42857 185 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 SLC14A1Q13336 389 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 GPR33Q49SQ1 333 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 TMEM236Q5W0B7 351 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 MACC1Q6ZN28 852 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 ZNF784Q8NCA9 323 aaPredicted RBP12.14□□□□□ -0.47
RNF4-222ENST00000541204 PIK3C3Q8NEB9 887 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 OR2A12Q8NGT7 310 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 FBLIM1Q8WUP2 373 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 POF1BQ8WVV4 589 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 ZNF566Q969W8 418 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 MYOCQ99972 504 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 MROQ9BYG7 248 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 WDR12Q9GZL7 423 aaKnown RBP12.14□□□□□ -0.47
RNF4-222ENST00000541204 PARVBQ9HBI1 364 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 PCDHGA10Q9Y5H3 936 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 OBSL1O75147 1896 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 OR2AG2A6NM03 316 aa12.14□□□□□ -0.47
RNF4-222ENST00000541204 MYO1GB0I1T2 1018 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms