RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 IGLV3-16A0A075B6K0 115 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 IGHV5-51A0A0C4DH38 117 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 E2F3O00716 465 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 KPNA5O15131 536 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 NIPSNAP2O75323 286 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 SASH3O75995 380 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CAPN1P07384 714 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 ACP5P13686 325 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 SLC2A4P14672 509 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 ZNF8P17098 575 aaPredicted RBP12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 VCLP18206 1134 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CAPZBP47756 277 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CLCNKAP51800 687 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 PPP1CAP62136 330 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 TUBB3Q13509 450 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 RAPSNQ13702 412 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 RASA2Q15283 850 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 INSCQ1MX18 579 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 PLA2G4EQ3MJ16 856 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 TTLL9Q3SXZ7 439 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 KHDC1Q4VXA5 237 aaKnown RBP12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CTSL3PQ5NE16 218 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 VWA5B1Q5TIE3 1220 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 FAM92BQ6ZTR7 304 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 OTOAQ7RTW8 1153 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 GDF7Q7Z4P5 450 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CUZD1Q86UP6 607 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 BPHLQ86WA6 291 aaPredicted RBP12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 KRT222Q8N1A0 295 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 RASGEF1AQ8N9B8 481 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 AVL9Q8NBF6 648 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 NAT14Q8WUY8 206 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CABS1Q96KC9 395 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CCM2Q9BSQ5 444 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 RAB33BQ9H082 229 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 VPS11Q9H270 941 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CHST8Q9H2A9 424 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 CAB39LQ9H9S4 337 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 GPAMQ9HCL2 828 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 ZNF446Q9NWS9 450 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 LGALS13Q9UHV8 139 aa12.05□□□□□ -0.48
CLSTN3-208ENST00000538933 A0A1B0GTL3 188 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 IQCF5A8MTL0 148 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 KMOO15229 486 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 GRID2O43424 1007 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 NUAK1O60285 661 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 APOA4P06727 396 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 RAB40ALP0C0E4 278 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 HOXB4P17483 251 aaPredicted RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 AMD1P17707 334 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 CRABP2P29373 138 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 PTGER4P35408 488 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 SKIV2L2P42285 1042 aaKnown RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 PRLHRP49683 370 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 RGS4P49798 205 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 TAS2R39P59534 338 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 RAB10P61026 200 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 ART3Q13508 389 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 BOP1Q14137 746 aaKnown RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 BCL7AQ4VC05 210 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 ZNF549Q6P9A3 640 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 Q6ZS92 163 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 TBC1D1Q86TI0 1168 aaPredicted RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 ZNF295-AS1Q8N0V1 137 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 BEND7Q8N7W2 519 aaPredicted RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 ENDOVQ8N8Q3 282 aaKnown RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 SKA2Q8WVK7 121 aaPredicted RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 KCNJ9Q92806 393 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 MR1Q95460 341 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 PGM2Q96G03 612 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 BIRC8Q96P09 236 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 SMC6Q96SB8 1091 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 GPR21Q99679 349 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 TRIM8Q9BZR9 551 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 IQCGQ9H095 443 aaKnown RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 TMBIM4Q9HC24 238 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 SYTL2Q9HCH5 934 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 SLC40A1Q9NP59 571 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 WASH6PQ9NQA3 447 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 SNX15Q9NRS6 342 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 PCMTD2Q9NV79 361 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 SENP1Q9P0U3 644 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 COPG2Q9UBF2 871 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 TCFL5Q9UL49 500 aa12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 G3BP2Q9UN86 482 aaKnown RBP12.04□□□□□ -0.48
CLSTN3-208ENST00000538933 GOLGA8RI6L899 631 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 PHGDHO43175 533 aaKnown RBP12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 STSP08842 583 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 GSTM1P09488 218 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 EBLN1P0CF75 366 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 FDXRP22570 491 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 CTSCP53634 463 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 CDKN2DP55273 166 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 GSTM4Q03013 218 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 SEPT7Q16181 437 aaKnown RBP12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 PLEKHS1Q5SXH7 462 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 AGBL2Q5U5Z8 902 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 CYB5D1Q6P9G0 228 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 CCDC91Q7Z6B0 441 aa12.03□□□□□ -0.48
CLSTN3-208ENST00000538933 CMC1Q7Z7K0 106 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms