RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NKX2-8O15522 239 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 CCNDBP1O95273 360 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 ITGB2P05107 769 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 KLK3P07288 261 aaPredicted RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 HBQ1P09105 142 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 RAB40ALP0C0E4 278 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 HIST1H2AGP0C0S8 130 aaPredicted RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 RHOXF2BP0C7M4 288 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 CCDC166P0CW27 439 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 EZRP15311 586 aaKnown RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 CD1DP15813 335 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 HIST1H2ADP20671 130 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 ITGAXP20702 1163 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 CCND1P24385 295 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 HRH2P25021 359 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 PTPN4P29074 926 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 PHBP35232 272 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 SLC26A3P40879 764 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 TSNQ15631 228 aaKnown RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 PRTGQ2VWP7 1150 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 LINC00303Q3SY05 128 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 TCTE1Q5JU00 501 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 FAM198BQ6UWH4 519 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 LCTLQ6UWM7 567 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 CMC1Q7Z7K0 106 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 KLHDC8AQ8IYD2 350 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 SPATA6LQ8N4H0 392 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 ZSCAN1Q8NBB4 408 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 LSM14AQ8ND56 463 aaKnown RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 ABHD11Q8NFV4 315 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 SLC44A1Q8WWI5 657 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 ATL1Q8WXF7 558 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 STARD8Q92502 1023 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 N4BP2L2Q92802 583 aaPredicted RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 CLIP3Q96DZ5 547 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 WBP1Q96G27 269 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 HIST1H2AHQ96KK5 128 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 HIST1H2AJQ99878 128 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 ZFYVE21Q9BQ24 234 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 SELENOSQ9BQE4 189 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 RHOXF2Q9BQY4 288 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 H2AFJQ9BTM1 129 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 TRIM54Q9BYV2 358 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 PCBD2Q9H0N5 130 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 SLC22A11Q9NSA0 550 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 TMEM184CQ9NVA4 438 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 UTP6Q9NYH9 597 aaKnown RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 DHCR7Q9UBM7 475 aaKnown RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 CTNNAL1Q9UBT7 734 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 SRPK3Q9UPE1 567 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 FARSAQ9Y285 508 aaKnown RBP12.42□□□□□ -0.42
VPS28-216ENST00000533806 ATRXP46100 2492 aa12.42□□□□□ -0.42
VPS28-216ENST00000533806 BOD1L1Q8NFC6 3051 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 NPEPPSL1A6NEC2 478 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 H0YGG7 62 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 H7BY64 318 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 ERVH48-1M5A8F1 160 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 MED26O95402 600 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 ACSL3O95573 720 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 GUCA1CO95843 209 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 FURINP09958 794 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 FAM153BP0C7A2 387 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 CRABP2P29373 138 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 GMPRP36959 345 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 KCNC1P48547 511 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 EMP3P54852 163 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 SLC12A2P55011 1212 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 ARF3P61204 181 aaPredicted RBP12.41□□□□□ -0.42
VPS28-216ENST00000533806 ATP6V0D1P61421 351 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 CSNK1G2P78368 415 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 DLG1Q12959 904 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 SLMAPQ14BN4 828 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 TBR1Q16650 682 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 PTCHD3Q3KNS1 767 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 FAM153CQ494X1 144 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 SOWAHCQ53LP3 525 aaPredicted RBP12.41□□□□□ -0.42
VPS28-216ENST00000533806 CDKL4Q5MAI5 379 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 WASHC2DQ5SRD0 308 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 YOD1Q5VVQ6 348 aaPredicted RBP12.41□□□□□ -0.42
VPS28-216ENST00000533806 PRAMEF13Q5VWM6 474 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 CAPN13Q6MZZ7 669 aaPredicted RBP12.41□□□□□ -0.42
VPS28-216ENST00000533806 ADAMTSL2Q86TH1 951 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 OR4K1Q8NGD4 311 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 PROKR1Q8TCW9 393 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 MR1Q95460 341 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 ISL2Q96A47 359 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 KIAA1191Q96A73 305 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 PTERQ96BW5 349 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 PYCR2Q96C36 320 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 PRAP1Q96NZ9 151 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 UBL7Q96S82 380 aaPredicted RBP12.41□□□□□ -0.42
VPS28-216ENST00000533806 SARGQ9BW04 601 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 NLNQ9BYT8 704 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 ACTL8Q9H568 366 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 STARD5Q9NSY2 213 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 WDR70Q9NW82 654 aa12.41□□□□□ -0.42
VPS28-216ENST00000533806 A0A0J9YVX5 310 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 A0A1B0GX78 115 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 HAT1O14929 419 aa12.4□□□□□ -0.42
VPS28-216ENST00000533806 DSCR3O14972 297 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms