RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PLCL1Q15111 1095 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 RPS6KA2Q15349 733 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 KIF19Q2TAC6 998 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 C10orf62Q5T681 223 aaPredicted RBP20.27■□□□□ 0.83
VPS28-208ENST00000527797 ICE2Q659A1 982 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 KRT78Q8N1N4 520 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 OR7G3Q8NG95 312 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 OR2A1Q8NGT9 310 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 PATE1Q8WXA2 126 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 LRTM1Q9HBL6 345 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 EML5Q05BV3 1969 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 A0A1B0GVT2 93 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 PSMD12O00232 456 aaPredicted RBP20.26■□□□□ 0.83
VPS28-208ENST00000527797 HRO43593 1189 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 RSL1D1O76021 490 aaKnown RBP20.26■□□□□ 0.83
VPS28-208ENST00000527797 THRAP10827 490 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 CXCR2P25025 360 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 PRDX1Q06830 199 aaKnown RBP20.26■□□□□ 0.83
VPS28-208ENST00000527797 MAD2L1Q13257 205 aaPredicted RBP20.26■□□□□ 0.83
VPS28-208ENST00000527797 GPR18Q14330 331 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 PLK5Q496M5 336 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 LAS2Q8IYD9 372 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 SDR16C5Q8N3Y7 309 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 ABHD11Q8NFV4 315 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 SLC37A2Q8TED4 501 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 PRM3Q9NNZ6 103 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 AIG1Q9NVV5 245 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 C1orf109Q9NX04 203 aa20.26■□□□□ 0.83
VPS28-208ENST00000527797 LOC100653049A0A140TA62 436 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 PIPSLA2A3N6 862 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 B4DGG1 531 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 AQP9O43315 295 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 PRICKLE3O43900 615 aaPredicted RBP20.25■□□□□ 0.83
VPS28-208ENST00000527797 SEC22BO75396 215 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 KRT34O76011 436 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 CHRM5P08912 532 aaPredicted RBP20.25■□□□□ 0.83
VPS28-208ENST00000527797 COX4I1P13073 169 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 HSD3B1P14060 373 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 EZRP15311 586 aaKnown RBP20.25■□□□□ 0.83
VPS28-208ENST00000527797 HSD3B2P26439 372 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 CCR8P51685 355 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 MNAT1P51948 309 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 ABATP80404 500 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 DDX39BQ13838 428 aaKnown RBP20.25■□□□□ 0.83
VPS28-208ENST00000527797 FAM129CQ86XR2 697 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 RBM12BQ8IXT5 1001 aaKnown RBP20.25■□□□□ 0.83
VPS28-208ENST00000527797 MIER2Q8N344 545 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 POU5F2Q8N7G0 328 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 RP9Q8TA86 221 aaKnown RBP20.25■□□□□ 0.83
VPS28-208ENST00000527797 MTERF1Q99551 399 aaKnown RBP20.25■□□□□ 0.83
VPS28-208ENST00000527797 AIF1LQ9BQI0 150 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 C1orf50Q9BV19 199 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 ERVMER34-1Q9H9K5 563 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 SUSD2Q9UGT4 822 aa20.25■□□□□ 0.83
VPS28-208ENST00000527797 ISM1B1AKI9 464 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 NPIPB8E9PQR5 432 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 YY2O15391 372 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 CCNDBP1O95273 360 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 PRPH2P23942 346 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 CPA2P48052 419 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 DIO3P55073 304 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 RPL38P63173 70 aaKnown RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 YBX1P67809 324 aaKnown RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 MEF2AQ02078 507 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 ACTN3Q08043 901 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 GRIK2Q13002 908 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 HERC3Q15034 1050 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 RFTN2Q52LD8 501 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 AGKQ53H12 422 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 ZFAND4Q86XD8 727 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 FBXL6Q8N531 539 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 ZNF548Q8NEK5 533 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 SLC22A18Q96BI1 424 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 KLHL29Q96CT2 875 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 SLC7A6OSQ96CW6 309 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 CMTM7Q96FZ5 175 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 BRF2Q9HAW0 419 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 MRPS30Q9NP92 439 aaKnown RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 SDR39U1Q9NRG7 319 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 CUEDC1Q9NWM3 386 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 SPHK1Q9NYA1 384 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 NOP53Q9NZM5 478 aaKnown RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 EIF3LQ9Y262 564 aaKnown RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 GPR45Q9Y5Y3 372 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 ABCA7Q8IZY2 2146 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 H7BY64 318 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 ANXA6P08133 673 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 GPX3P22352 226 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 PTPN4P29074 926 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 CMPK1P30085 196 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 CNR2P34972 360 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 MRPL19P49406 292 aaKnown RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 ACADVLP49748 655 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 PHEXP78562 749 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 CYLC2Q14093 348 aaPredicted RBP20.24■□□□□ 0.83
VPS28-208ENST00000527797 MAPRE2Q15555 327 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 IL23RQ5VWK5 629 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 TMIGD1Q6UXZ0 262 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 CEP68Q76N32 757 aa20.24■□□□□ 0.83
VPS28-208ENST00000527797 SFTPA2Q8IWL1 248 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms