RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KDELR2P33947 212 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 KCNC1P48547 511 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 NCS1P62166 190 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 NFATC2Q13469 925 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 VMACQ2NL98 169 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 CYBRD1Q53TN4 286 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 OTUD1Q5VV17 481 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 USP30Q70CQ3 517 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 GALNT7Q86SF2 657 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 UBE2J2Q8N2K1 259 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 LINC01465Q8N7H1 131 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ACDQ96AP0 544 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 POLR2J2Q9GZM3 115 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 NECTIN3Q9NQS3 549 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ASAH2Q9NR71 780 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SNX7Q9UNH6 387 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 USP22Q9UPT9 525 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 PCDHA9Q9Y5H5 950 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 OAS3Q9Y6K5 1087 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 LOC285095A0A1B0GVY8 99 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 WASH4PA8MWX3 477 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 MATN1P21941 496 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC15A1P46059 708 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 AP1S2P56377 157 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 RAPSNQ13702 412 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 TSTQ16762 297 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 RGMBQ6NW40 437 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 LAPTM4BQ86VI4 370 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ANKRD13BQ86YJ7 626 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ARRDC2Q8TBH0 407 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 CD200R1Q8TD46 325 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC38A4Q969I6 547 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 CEP295NLQ96MC4 621 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC35A5Q9BS91 424 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 MAGIXQ9H6Y5 334 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 PCDHGB5Q9Y5G0 923 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 GJB5O95377 273 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 GKP32189 559 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 DGKEP52429 567 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SRP54P61011 504 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 FNDC3BQ53EP0 1204 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 NOXRED1Q6NXP6 359 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 C17orf64Q86WR6 236 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 CACUL1Q86Y37 369 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 NPAS4Q8IUM7 802 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 PIANPQ8IYJ0 282 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 CFAP206Q8IYR0 622 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 NXPE1Q8N323 547 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 DPP10Q8N608 796 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 PROKR1Q8TCW9 393 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 NETO1Q8TDF5 533 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 USP7Q93009 1102 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 AP2M1Q96CW1 435 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SUV39H2Q9H5I1 410 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ING3Q9NXR8 418 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 RIMKLBQ9ULI2 386 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 MRPS7Q9Y2R9 242 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SLX4Q8IY92 1834 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 M0QZQ0 153 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 GUCY1B2O75343 617 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 RORCP51449 518 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 RPS3AP61247 264 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 CDK5R2Q13319 367 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 GNA13Q14344 377 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ANKDD1AQ495B1 522 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 BHLHB9Q6PI77 547 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 SERINC5Q86VE9 423 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 OR5AK3PQ8NH89 298 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 MCMBPQ9BTE3 642 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 ITM2CQ9NQX7 267 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 TVP23BQ9NYZ1 205 aa8.18□□□□□ -1.1
LIMCH1-216ENST00000512820 FABP12A6NFH5 140 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 PLOD3O60568 738 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CRHBPP24387 322 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 MAPK9P45984 424 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CD97P48960 835 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 BNC1Q01954 994 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 PCBP2Q15366 365 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ZSWIM7Q19AV6 140 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 C6orf183Q5T699 404 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TNFAIP8L2Q6P589 184 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TUBA3EQ6PEY2 450 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TMEM220Q6QAJ8 160 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CCDC149Q6ZUS6 474 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CHCHD4Q8N4Q1 142 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 EXOSC8Q96B26 276 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ITPKCQ96DU7 683 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 MIR1-1HGQ9H1L0 117 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 CLEC4MQ9H2X3 399 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 TMEM45AQ9NWC5 275 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 MKLN1Q9UL63 735 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SPATA2Q9UM82 520 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 A0A1W2PRB8 838 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ARNTLO00327 626 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC30A4O14863 429 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 GJB3O75712 270 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 VIPP01282 170 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 SBK3P0C264 359 aa8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ATXN1LP0C7T5 689 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF865P0CJ78 1059 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms