RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TADA1Q96BN2 335 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 ATXN7L3BQ96GX2 97 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 RBM41Q96IZ5 413 aaKnown RBP4.47□□□□□ -1.69
NUP54-206ENST00000508465 QKIQ96PU8 341 aaKnown RBP eCLIP4.47□□□□□ -1.69
NUP54-206ENST00000508465 TRIB3Q96RU7 358 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 ANP32EQ9BTT0 268 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 SPATA16Q9BXB7 569 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 TDRD1Q9BXT4 1180 aaKnown RBP4.47□□□□□ -1.69
NUP54-206ENST00000508465 FRMD8Q9BZ67 464 aaPredicted RBP4.47□□□□□ -1.69
NUP54-206ENST00000508465 GPR63Q9BZJ6 419 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 DPEP2Q9H4A9 486 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 FAM83DQ9H4H8 585 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 UGT1A7Q9HAW7 530 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 UGT1A10Q9HAW8 530 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 UGT1A8Q9HAW9 530 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 USP29Q9HBJ7 922 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 EMC7Q9NPA0 242 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 LZTFL1Q9NQ48 299 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 PHPT1Q9NRX4 125 aaPredicted RBP4.47□□□□□ -1.69
NUP54-206ENST00000508465 KLHL8Q9P2G9 620 aaPredicted RBP4.47□□□□□ -1.69
NUP54-206ENST00000508465 AMACRQ9UHK6 382 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 RSPH14Q9UHP6 348 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 SUFUQ9UMX1 484 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 RPL26L1Q9UNX3 145 aaKnown RBP4.47□□□□□ -1.69
NUP54-206ENST00000508465 PCDHB1Q9Y5F3 818 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 PCDHGA1Q9Y5H4 931 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 DGKBQ9Y6T7 804 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 KNTC1P50748 2209 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 ASXL3Q9C0F0 2248 aa4.47□□□□□ -1.69
NUP54-206ENST00000508465 MAP1BP46821 2468 aaKnown RBP4.47□□□□□ -1.69
NUP54-206ENST00000508465 EPG5Q9HCE0 2579 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 PTPRBP23467 1997 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 LOC285095A0A1B0GVY8 99 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 A0A1W2PNU3 283 aaPredicted RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 EME2A4GXA9 379 aaPredicted RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 HACD1B0YJ81 288 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 CCL22O00626 93 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 TOR1BO14657 336 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 TPP1O14773 563 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 B4GAT1O43505 415 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 SNX2O60749 519 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 USP12O75317 370 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 CSO75390 466 aaKnown RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 MTX2O75431 263 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 TJP3O95049 919 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 SLC25A14O95258 325 aaPredicted RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 CBSLP0DN79 551 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ETS1P14921 441 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 CA4P22748 312 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 KELP23276 732 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 NFKBIAP25963 317 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 PSMB4P28070 264 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ALDH4A1P30038 563 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 CBSP35520 551 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 EIF2S3P41091 472 aaKnown RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 CETN2P41208 172 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 BLKP51451 505 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 GSDMDP57764 484 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 KIAA1024LP59773 190 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 TMPRSS15P98073 1019 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ILKQ13418 452 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 XRCC4Q13426 336 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 CHRNA6Q15825 494 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.46□□□□□ -1.7
NUP54-206ENST00000508465 AMZ1Q400G9 498 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 KHDC1Q4VXA5 237 aaKnown RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 PYCR3Q53H96 274 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ANKRD20A2Q5SQ80 823 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ANKRD20A1Q5TYW2 823 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ANKRD20A3Q5VUR7 823 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 NKAIN2Q5VXU1 208 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 C11orf87Q6NUJ2 197 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 LVRNQ6Q4G3 990 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 CHST15Q7LFX5 561 aaPredicted RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 LRRC8AQ8IWT6 810 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 SDR16C5Q8N3Y7 309 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 FSTL5Q8N475 847 aaPredicted RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 TTC30BQ8N4P2 665 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 UBL4BQ8N7F7 174 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 DCBLD1Q8N8Z6 715 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 CCHCR1Q8TD31 782 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 BLOC1S5Q8TDH9 187 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 C1orf54Q8WWF1 131 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ATG4AQ8WYN0 398 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 HES6Q96HZ4 224 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 COX14Q96I36 57 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 SMAD5Q99717 465 aaKnown RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 CCDC3Q9BQI4 270 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 FICDQ9BVA6 458 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 OR2AG1Q9H205 316 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 FAM96AQ9H5X1 160 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 MAGEE1Q9HCI5 957 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 IL26Q9NPH9 171 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 HAUS2Q9NVX0 235 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 FBXO34Q9NWN3 711 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 PIH1D1Q9NWS0 290 aaKnown RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 GEMIN8Q9NWZ8 242 aaKnown RBP4.46□□□□□ -1.7
NUP54-206ENST00000508465 TAAR2Q9P1P5 351 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 ATXN10Q9UBB4 475 aa4.46□□□□□ -1.7
NUP54-206ENST00000508465 SLC23A2Q9UGH3 650 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms