RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 SYT14P1Q58G82 188 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 TCP11X2Q5H9J9 407 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 ELFN2Q5R3F8 820 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 CST9LP1Q5W188 147 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 KRT39Q6A163 491 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 C11orf63Q6NUN7 778 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 Q6ZRP5 223 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 ZBTB49Q6ZSB9 765 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 DET1Q7L5Y6 550 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 TMPRSS11BQ86T26 416 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 NUDT13Q86X67 352 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.09□□□□□ -1.91
VPS50-219ENST00000495039 NIPA2Q8N8Q9 360 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 Q8NBF4 154 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 SLC4A11Q8NBS3 891 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 NPEPL1Q8NDH3 523 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 MIPOL1Q8TD10 442 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 HDAC11Q96DB2 347 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 RMDN1Q96DB5 314 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 CNDP2Q96KP4 475 aaKnown RBP3.09□□□□□ -1.91
VPS50-219ENST00000495039 LINC00615Q96LM1 132 aaPredicted RBP3.09□□□□□ -1.91
VPS50-219ENST00000495039 CFAP57Q96MR6 1250 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 PRICKLE1Q96MT3 831 aaPredicted RBP3.09□□□□□ -1.91
VPS50-219ENST00000495039 NUP85Q9BW27 656 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 MYNNQ9NPC7 610 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 ZNF701Q9NV72 531 aaPredicted RBP3.09□□□□□ -1.91
VPS50-219ENST00000495039 SPHK1Q9NYA1 384 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 CPSF3Q9UKF6 684 aaKnown RBP3.09□□□□□ -1.91
VPS50-219ENST00000495039 RIPK3Q9Y572 518 aa3.09□□□□□ -1.91
VPS50-219ENST00000495039 LOC101059948A0A1B0GTJ6 334 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 A0A1W2PPM1 405 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 A0A1W2PPQ1 181 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 NEMP2A6NFY4 417 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 URADA6NGE7 173 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 TRIM77I1YAP6 450 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 PHOX2AO14813 284 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 TBX10O75333 385 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 HPRP00739 348 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 IGHV2-70P01814 119 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 CA4P22748 312 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 JAK1P23458 1154 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 EEF1B2P24534 225 aaKnown RBP3.08□□□□□ -1.92
VPS50-219ENST00000495039 PTPN3P26045 913 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 PIK3R1P27986 724 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 MNDAP41218 407 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 ASCL1P50553 236 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 PPP5CP53041 499 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 MAPK12P53778 367 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 HNRNPKP61978 463 aaKnown RBP eCLIP3.08□□□□□ -1.92
VPS50-219ENST00000495039 RBPJQ06330 500 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 VWC2Q2TAL6 325 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 ITPRIPL2Q3MIP1 535 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 Q6ZVH6 145 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 CHST3Q7LGC8 479 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 ARHGAP22Q7Z5H3 698 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 PTAR1Q7Z6K3 402 aaPredicted RBP3.08□□□□□ -1.92
VPS50-219ENST00000495039 CENPVQ7Z7K6 275 aaPredicted RBP3.08□□□□□ -1.92
VPS50-219ENST00000495039 CDK20Q8IZL9 346 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 MAPKAPK5-AS1Q8N8E1 139 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 OR6J1Q8NGC5 347 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 OLIG1Q8TAK6 271 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 RFT1Q96AA3 541 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 THOC1Q96FV9 657 aaKnown RBP3.08□□□□□ -1.92
VPS50-219ENST00000495039 URM1Q9BTM9 101 aaKnown RBP3.08□□□□□ -1.92
VPS50-219ENST00000495039 ATP13A3Q9H7F0 1226 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 Q9N2K0 584 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 SDR39U1Q9NRG7 319 aaPredicted RBP3.08□□□□□ -1.92
VPS50-219ENST00000495039 GKN1Q9NS71 199 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 NFKBIL1Q9UBC1 381 aaPredicted RBP3.08□□□□□ -1.92
VPS50-219ENST00000495039 CACNG4Q9UBN1 327 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 CFDP1Q9UEE9 299 aaPredicted RBP3.08□□□□□ -1.92
VPS50-219ENST00000495039 DAPK2Q9UIK4 370 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 RPS6KL1Q9Y6S9 549 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 PCDH11YQ9BZA8 1340 aa3.08□□□□□ -1.92
VPS50-219ENST00000495039 A8MXE2 369 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 ZNF195O14628 629 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 DKC1O60832 514 aaKnown RBP eCLIP3.07□□□□□ -1.92
VPS50-219ENST00000495039 CELF2O95319 508 aaKnown RBP3.07□□□□□ -1.92
VPS50-219ENST00000495039 FYNP06241 537 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 APOA4P06727 396 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 OR52Z1P0C646 297 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 ERCC2P18074 760 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 ACHEP22303 614 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 CA6P23280 308 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 MPZP25189 248 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 OPRL1P41146 370 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 HERV-K104P61576 105 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 MAT1AQ00266 395 aaKnown RBP3.07□□□□□ -1.92
VPS50-219ENST00000495039 LY6DQ14210 128 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 TNIP1Q15025 636 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 ODF4Q2M2E3 257 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 PRR27Q6MZM9 219 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 RBPMS2Q6ZRY4 209 aaKnown RBP3.07□□□□□ -1.92
VPS50-219ENST00000495039 NUP54Q7Z3B4 507 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 MFN1Q8IWA4 741 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 MAML2Q8IZL2 1156 aaPredicted RBP3.07□□□□□ -1.92
VPS50-219ENST00000495039 EID3Q8N140 333 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 NME8Q8N427 588 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 THAP8Q8NA92 274 aa3.07□□□□□ -1.92
VPS50-219ENST00000495039 XXYLT1Q8NBI6 393 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms