RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 SLC22A18Q96BI1 424 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 ABCG4Q9H172 646 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 CCDC134Q9H6E4 229 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 EML4Q9HC35 981 aaKnown RBP18.66■□□□□ 0.58
USP39-218ENST00000493829 FGFR1OP2Q9NVK5 253 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 EVA1BQ9NVM1 165 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 ZNF225Q9UK10 706 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 POMT2Q9UKY4 750 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 ATXN7L1Q9ULK2 861 aaPredicted RBP18.66■□□□□ 0.58
USP39-218ENST00000493829 COL5A1P20908 1838 aaPredicted RBP18.66■□□□□ 0.58
USP39-218ENST00000493829 H7BY64 318 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 FFAR3O14843 346 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 CAPN5O15484 640 aaPredicted RBP18.66■□□□□ 0.58
USP39-218ENST00000493829 GPR42O15529 346 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 LSSP48449 732 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 DUSP3P51452 185 aaPredicted RBP18.66■□□□□ 0.58
USP39-218ENST00000493829 SEC24CP53992 1094 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 FOXA1P55317 472 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 DOC2AQ14183 400 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 MILR1Q7Z6M3 343 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 LRRC34Q8IZ02 419 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 THOC1Q96FV9 657 aaKnown RBP18.66■□□□□ 0.58
USP39-218ENST00000493829 PRAP1Q96NZ9 151 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 FAM107BQ9H098 131 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 SPNS1Q9H2V7 528 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 PRM3Q9NNZ6 103 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 PNPOQ9NVS9 261 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 GPRC5BQ9NZH0 403 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 TMEM9Q9P0T7 183 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 ZDHHC2Q9UIJ5 367 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 ENTPD2Q9Y5L3 495 aa18.66■□□□□ 0.58
USP39-218ENST00000493829 ZFHX2Q9C0A1 2572 aaPredicted RBP18.65■□□□□ 0.58
USP39-218ENST00000493829 IGKV1-8A0A0C4DH67 115 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 KIF1CO43896 1103 aaKnown RBP18.65■□□□□ 0.58
USP39-218ENST00000493829 CCNDBP1O95273 360 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 CKMT2P17540 419 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 CD22P20273 847 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 MAGP20916 626 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 CD1CP29017 333 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 CCL7P80098 99 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 PRDX1Q06830 199 aaKnown RBP18.65■□□□□ 0.58
USP39-218ENST00000493829 SLBPQ14493 270 aaKnown RBP eCLIP18.65■□□□□ 0.58
USP39-218ENST00000493829 TCHHL1Q5QJ38 904 aaPredicted RBP18.65■□□□□ 0.58
USP39-218ENST00000493829 SNAP47Q5SQN1 464 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 NXPE4Q6UWF7 544 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 SLCO4C1Q6ZQN7 724 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 NUDT22Q9BRQ3 303 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 DPH7Q9BTV6 452 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 RAP2CQ9Y3L5 183 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 TIMM22Q9Y584 194 aa18.65■□□□□ 0.58
USP39-218ENST00000493829 SNRNP200O75643 2136 aaKnown RBP18.65■□□□□ 0.58
USP39-218ENST00000493829 ASCC3Q8N3C0 2202 aaKnown RBP18.64■□□□□ 0.57
USP39-218ENST00000493829 CLDN9O95484 217 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 ESRRBO95718 433 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 CDH3P22223 829 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 SERPINB3P29508 390 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 PKNOX1P55347 436 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 NAA20P61599 178 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 GPLD1P80108 840 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 CFHR1Q03591 330 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 CPSF6Q16630 551 aaKnown RBP eCLIP18.64■□□□□ 0.57
USP39-218ENST00000493829 CRLF3Q8IUI8 442 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 PLD3Q8IV08 490 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 KIAA2013Q8IYS2 634 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 C7orf26Q96N11 449 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 TWSG1Q9GZX9 223 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 ILKAPQ9H0C8 392 aaPredicted RBP18.64■□□□□ 0.57
USP39-218ENST00000493829 STK38LQ9Y2H1 464 aa18.64■□□□□ 0.57
USP39-218ENST00000493829 A0A0J9YY10 115 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 MATN2O00339 956 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 FOXD2O60548 495 aaPredicted RBP18.63■□□□□ 0.57
USP39-218ENST00000493829 PRAMEF10O60809 474 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 EDF1O60869 148 aaKnown RBP18.63■□□□□ 0.57
USP39-218ENST00000493829 SKAP2O75563 359 aaPredicted RBP18.63■□□□□ 0.57
USP39-218ENST00000493829 RASSF9O75901 435 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 CAPN1P07384 714 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 C1GALT1C1LP0DN25 315 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 HGFP14210 728 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 HOXB3P14651 431 aaPredicted RBP18.63■□□□□ 0.57
USP39-218ENST00000493829 PNLIPP16233 465 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 CCR8P51685 355 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 EP300Q09472 2414 aaPredicted RBP18.63■□□□□ 0.57
USP39-218ENST00000493829 ATG9BQ674R7 924 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 ZNF740Q8NDX6 193 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 CHMP6Q96FZ7 201 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 PPP1R36Q96LQ0 422 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 MAP3K3Q99759 626 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 NTMT1Q9BV86 223 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 PCM1Q15154 2024 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 A0A1W2PQM1 296 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 FEZF1A0PJY2 475 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 AGRPO00253 132 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 HAT1O14929 419 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 CBFA2T3O75081 653 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 EBLN1P0CF75 366 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 HMOX2P30519 316 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 GRIA3P42263 894 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 ABATP80404 500 aa18.63■□□□□ 0.57
USP39-218ENST00000493829 PDCD2Q16342 344 aaPredicted RBP18.63■□□□□ 0.57
USP39-218ENST00000493829 SLC5A12Q1EHB4 618 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms