RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 FITM1A5D6W6 292 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 K7EM74 188 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 DSCR3O14972 297 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 SRPX2O60687 465 aaPredicted RBP23.6■■□□□ 1.37
UPF3A-209ENST00000492270 RFPL1O75677 317 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 EIF2S1P05198 315 aaKnown RBP23.6■■□□□ 1.37
UPF3A-209ENST00000492270 SAT1P21673 171 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 ARSFP54793 590 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 TBPL1P62380 186 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 SP140Q13342 867 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 GRM7Q14831 915 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 THEMIS2Q5TEJ8 643 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 ZNF425Q6IV72 752 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 MRPL14Q6P1L8 145 aaKnown RBP23.6■■□□□ 1.37
UPF3A-209ENST00000492270 TMEM207Q6UWW9 146 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 APLFQ8IW19 511 aaPredicted RBP23.6■■□□□ 1.37
UPF3A-209ENST00000492270 MCOLN3Q8TDD5 553 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 DHRS4Q9BTZ2 278 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 PARVBQ9HBI1 364 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 ENAMQ9NRM1 1142 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 ANKMY1Q9P2S6 941 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 CDC23Q9UJX2 597 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 TLK1Q9UKI8 766 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 IKZF3Q9UKT9 509 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 PADI2Q9Y2J8 665 aa23.6■■□□□ 1.37
UPF3A-209ENST00000492270 UTP11Q9Y3A2 253 aaKnown RBP23.6■■□□□ 1.37
UPF3A-209ENST00000492270 PTRH2Q9Y3E5 179 aaKnown RBP23.6■■□□□ 1.37
UPF3A-209ENST00000492270 FAM95CA0A1B0GW59 222 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 CCNDBP1O95273 360 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 PLTPP55058 493 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 IL2P60568 153 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 ZNF460Q14592 562 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 NAA25Q14CX7 972 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 ZDHHC24Q6UX98 284 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 PRICKLE2Q7Z3G6 844 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 SLC26A11Q86WA9 606 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 PALM2Q8IXS6 379 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 FBXO25Q8TCJ0 367 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 CCDC138Q96M89 665 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 C17orf62Q9BQA9 187 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 RAB17Q9H0T7 212 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 ATG10Q9H0Y0 220 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 CCDC177Q9NQR7 707 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-209ENST00000492270 SH2B3Q9UQQ2 575 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 TP53TG5Q9Y2B4 290 aa23.59■■□□□ 1.37
UPF3A-209ENST00000492270 HEMK1Q9Y5R4 338 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-209ENST00000492270 H0YGG7 62 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 HAT1O14929 419 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 EIF3HO15372 352 aaKnown RBP eCLIP23.58■■□□□ 1.37
UPF3A-209ENST00000492270 SLC16A5O15375 505 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 SLC28A2O43868 658 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 URI1O94763 535 aaPredicted RBP23.58■■□□□ 1.37
UPF3A-209ENST00000492270 OTX2P32243 289 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 ARF3P61204 181 aaPredicted RBP23.58■■□□□ 1.37
UPF3A-209ENST00000492270 ATP1A4Q13733 1029 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 AGTRAPQ6RW13 159 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 COX15Q7KZN9 410 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 ADCK2Q7Z695 626 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 PLD3Q8IV08 490 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 MCMBPQ9BTE3 642 aa23.58■■□□□ 1.37
UPF3A-209ENST00000492270 HYKKA2RU49 373 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 CXorf49A8MYA2 514 aaPredicted RBP23.57■■□□□ 1.36
UPF3A-209ENST00000492270 MKRN2OSH3BPM6 223 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 PYCARD-AS1I3L0S3 204 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 ZNF37AP17032 561 aaPredicted RBP23.57■■□□□ 1.36
UPF3A-209ENST00000492270 FOLR3P41439 243 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 OR1D4P47884 311 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 ABATP80404 500 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 SLC7A5Q01650 507 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 CKAP4Q07065 602 aaKnown RBP23.57■■□□□ 1.36
UPF3A-209ENST00000492270 ZXDCQ2QGD7 858 aaPredicted RBP23.57■■□□□ 1.36
UPF3A-209ENST00000492270 YOD1Q5VVQ6 348 aaPredicted RBP23.57■■□□□ 1.36
UPF3A-209ENST00000492270 PRAMEF13Q5VWM6 474 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 CCDC25Q86WR0 208 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 OR2Y1Q8NGV0 311 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 ALKBH8Q96BT7 664 aaKnown RBP23.57■■□□□ 1.36
UPF3A-209ENST00000492270 C10orf90Q96M02 699 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 ING2Q9H160 280 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 MAU2Q9Y6X3 613 aa23.57■■□□□ 1.36
UPF3A-209ENST00000492270 ESYT3A0FGR9 886 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 H7BY64 318 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 UMODP07911 640 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 TAS2R39P59534 338 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 GPX6P59796 221 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 HKDC1Q2TB90 917 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 PRTGQ2VWP7 1150 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 FAM214AQ32MH5 1076 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 LACTB2Q53H82 288 aaPredicted RBP23.56■■□□□ 1.36
UPF3A-209ENST00000492270 RAB43Q86YS6 212 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 ZNF592Q92610 1267 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 VPS39Q96JC1 886 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 PRAP1Q96NZ9 151 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 OR2A5Q96R48 311 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 LRRC1Q9BTT6 524 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 RHOJQ9H4E5 214 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 NSMCE4AQ9NXX6 385 aa23.56■■□□□ 1.36
UPF3A-209ENST00000492270 TCRBV9S1A1TA0A576 114 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 PDGFAP04085 211 aa23.55■■□□□ 1.36
UPF3A-209ENST00000492270 EZRP15311 586 aaKnown RBP23.55■■□□□ 1.36
UPF3A-209ENST00000492270 NAE1Q13564 534 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms