RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 ERVK-8P63133 956 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 IRX1P78414 480 aaPredicted RBP20.87■□□□□ 0.93
SMC4-221ENST00000489573 GPR18Q14330 331 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 PLCL1Q15111 1095 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 HIST2H2ACQ16777 129 aaPredicted RBP20.87■□□□□ 0.93
SMC4-221ENST00000489573 C6orf136Q5SQH8 315 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 HIST2H2AA3Q6FI13 130 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 BMP8AQ7Z5Y6 402 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 SLC9B2Q86UD5 537 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 SDR16C5Q8N3Y7 309 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 ACPTQ9BZG2 426 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 ERVMER34-1Q9H9K5 563 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 TAGLN3Q9UI15 199 aa20.87■□□□□ 0.93
SMC4-221ENST00000489573 PRICKLE3O43900 615 aaPredicted RBP20.86■□□□□ 0.93
SMC4-221ENST00000489573 CHRM5P08912 532 aaPredicted RBP20.86■□□□□ 0.93
SMC4-221ENST00000489573 CALB2P22676 271 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 PIK3R1P27986 724 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 CNR2P34972 360 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 CTSKP43235 329 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 SCTRP47872 440 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 STX1BP61266 288 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 HMGCS1Q01581 520 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 CSTF3Q12996 717 aaKnown RBP20.86■□□□□ 0.93
SMC4-221ENST00000489573 NAA25Q14CX7 972 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 AP5B1Q2VPB7 878 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 C10orf62Q5T681 223 aaPredicted RBP20.86■□□□□ 0.93
SMC4-221ENST00000489573 CEP68Q76N32 757 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 SFTPA2Q8IWL1 248 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 RBM12BQ8IXT5 1001 aaKnown RBP20.86■□□□□ 0.93
SMC4-221ENST00000489573 KRT78Q8N1N4 520 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 FNDC5Q8NAU1 212 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 ABHD11Q8NFV4 315 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 OR7G3Q8NG95 312 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 OR2A1Q8NGT9 310 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 ACTR5Q9H9F9 607 aaPredicted RBP20.86■□□□□ 0.93
SMC4-221ENST00000489573 CUEDC1Q9NWM3 386 aaPredicted RBP20.86■□□□□ 0.93
SMC4-221ENST00000489573 PILRBQ9UKJ0 227 aa20.86■□□□□ 0.93
SMC4-221ENST00000489573 HNRNPCL1O60812 293 aaKnown RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 PIAS2O75928 621 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 RSL1D1O76021 490 aaKnown RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 CCNDBP1O95273 360 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 ESRRAP11474 423 aaPredicted RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 PCNAP12004 261 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 HSD3B1P14060 373 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 HSD3B2P26439 372 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 PRDX6P30041 224 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 PEBP1P30086 187 aaKnown RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 CCR8P51685 355 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 NCALDP61601 193 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 PRDX1Q06830 199 aaKnown RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 GSTA3Q16772 222 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 KIF19Q2TAC6 998 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 SMU1Q2TAY7 513 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 ZNF528Q3MIS6 628 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 FAM129CQ86XR2 697 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 LAS2Q8IYD9 372 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 AVL9Q8NBF6 648 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 UBE2E3Q969T4 207 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 SPNS1Q9H2V7 528 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 LRTM1Q9HBL6 345 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 TMEM74BQ9NUR3 256 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 AIG1Q9NVV5 245 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 SPHK1Q9NYA1 384 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 SPAG17Q6Q759 2223 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 LMO7DNF2Z398 122 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 YY2O15391 372 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 IDO1P14902 403 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 CXCR2P25025 360 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 YBX1P67809 324 aaKnown RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 ABATP80404 500 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 MEF2AQ02078 507 aaPredicted RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 HHEXQ03014 270 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 EMX2Q04743 252 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 DDX39BQ13838 428 aaKnown RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 ADGRF3Q8IZF5 1079 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 ZC3H10Q96K80 434 aaKnown RBP20.85■□□□□ 0.93
SMC4-221ENST00000489573 AIF1LQ9BQI0 150 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 ZSCAN32Q9NX65 697 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 SNX11Q9Y5W9 270 aa20.85■□□□□ 0.93
SMC4-221ENST00000489573 GON4LQ3T8J9 2241 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 TNRC6BQ9UPQ9 1833 aaKnown RBP20.84■□□□□ 0.93
SMC4-221ENST00000489573 FAM221BA6H8Z2 402 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 ISM1B1AKI9 464 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 NPIPB8E9PQR5 432 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 BTN3A3O00478 584 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 SDC3O75056 442 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 ANXA6P08133 673 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 PRPH2P23942 346 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 AVPR2P30518 371 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 RPL38P63173 70 aaKnown RBP20.84■□□□□ 0.93
SMC4-221ENST00000489573 REEP5Q00765 189 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 MAD2L1Q13257 205 aaPredicted RBP20.84■□□□□ 0.93
SMC4-221ENST00000489573 TMEM26Q6ZUK4 368 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 ZFAND4Q86XD8 727 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 HUS1BQ8NHY5 278 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 SLC22A18Q96BI1 424 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 CMTM5Q96DZ9 223 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 MTERF1Q99551 399 aaKnown RBP20.84■□□□□ 0.93
SMC4-221ENST00000489573 C1orf50Q9BV19 199 aa20.84■□□□□ 0.93
SMC4-221ENST00000489573 TWSG1Q9GZX9 223 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms