RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CUEDC1Q9NWM3 386 aaPredicted RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 ARL15Q9NXU5 204 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 MTRF1LQ9UGC7 380 aaKnown RBP14.93□□□□□ -0.02
HMGA1-206ENST00000478214 SRPK3Q9UPE1 567 aa14.93□□□□□ -0.02
HMGA1-206ENST00000478214 KALRNO60229 2985 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 NPEPPSL1A6NEC2 478 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 PHGDHO43175 533 aaKnown RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 SRPX2O60687 465 aaPredicted RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 WISP3O95389 354 aaPredicted RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 GUCA1CO95843 209 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 PRB1P04280 392 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 EIF2S1P05198 315 aaKnown RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 RAB40ALP0C0E4 278 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 AGXTP21549 392 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 ECHS1P30084 290 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 SPRP35270 261 aaPredicted RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 AP1S2P56377 157 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 SLC9A5Q14940 896 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 ZXDCQ2QGD7 858 aaPredicted RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 DEFB109BQ30KR1 87 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 TCTE1Q5JU00 501 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 WASHC2DQ5SRD0 308 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 GRTP1Q5TC63 336 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 PRAMEF13Q5VWM6 474 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 BORAQ6PGQ7 559 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 TTLL10Q6ZVT0 673 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 ADCK2Q7Z695 626 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 EXD3Q8N9H8 876 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 PROKR1Q8TCW9 393 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 ALKBH8Q96BT7 664 aaKnown RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 CATSPER2Q96P56 530 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 ZFYVE21Q9BQ24 234 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 DPH2Q9BQC3 489 aaPredicted RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 NLNQ9BYT8 704 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 TRIM54Q9BYV2 358 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 FAM129AQ9BZQ8 928 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 UNKQ9C0B0 810 aaKnown RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 SYNPO2LQ9H987 977 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 POPDC3Q9HBV1 291 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 UTP6Q9NYH9 597 aaKnown RBP14.92□□□□□ -0.02
HMGA1-206ENST00000478214 NINJ2Q9NZG7 142 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 ANKMY1Q9P2S6 941 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 SNX7Q9UNH6 387 aa14.92□□□□□ -0.02
HMGA1-206ENST00000478214 CDC14CA4D256 554 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 FITM1A5D6W6 292 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 PABPN1LA6NDY0 278 aaKnown RBP14.91□□□□□ -0.02
HMGA1-206ENST00000478214 C9J4A7 227 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 H0YGG7 62 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 H7BY64 318 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 ENO2P09104 434 aaPredicted RBP14.91□□□□□ -0.02
HMGA1-206ENST00000478214 FAM87AP0C7U9 286 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 ALAS2P22557 587 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 ARSFP54793 590 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 ARF3P61204 181 aaPredicted RBP14.91□□□□□ -0.02
HMGA1-206ENST00000478214 DCDP81605 110 aaKnown RBP14.91□□□□□ -0.02
HMGA1-206ENST00000478214 GRM7Q14831 915 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 NCF4Q15080 339 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 TSNQ15631 228 aaKnown RBP14.91□□□□□ -0.02
HMGA1-206ENST00000478214 PPP1R3AQ16821 1122 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 NKAIN1Q4KMZ8 207 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 MLIPQ5VWP3 458 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 SYVN1Q86TM6 617 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 PLD3Q8IV08 490 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 SPATA6LQ8N4H0 392 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 TTC29Q8NA56 475 aaPredicted RBP14.91□□□□□ -0.02
HMGA1-206ENST00000478214 ANKRD7Q92527 254 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 PYCR2Q96C36 320 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 FBXL8Q96CD0 374 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 MRRFQ96E11 262 aaKnown RBP14.91□□□□□ -0.02
HMGA1-206ENST00000478214 TSPAN17Q96FV3 270 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 PRAP1Q96NZ9 151 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 FMO2Q99518 471 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 ARHGAP9Q9BRR9 750 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 SGPP1Q9BX95 441 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 SEMA4CQ9C0C4 833 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 PCBD2Q9H0N5 130 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 ENAMQ9NRM1 1142 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 CUTCQ9NTM9 273 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 NDOR1Q9UHB4 597 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 NOVA2Q9UNW9 492 aaKnown RBP14.91□□□□□ -0.02
HMGA1-206ENST00000478214 SH2B3Q9UQQ2 575 aa14.91□□□□□ -0.02
HMGA1-206ENST00000478214 A0A1B0GX78 115 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 EIF4E1BA6NMX2 242 aaKnown RBP14.9□□□□□ -0.02
HMGA1-206ENST00000478214 TK2O00142 265 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 HAT1O14929 419 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 RECKO95980 971 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 STMN1P16949 149 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 ITGAXP20702 1163 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 NAB1Q13506 487 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 IL10RAQ13651 578 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 ZKSCAN8Q15776 578 aaPredicted RBP14.9□□□□□ -0.02
HMGA1-206ENST00000478214 LCTLQ6UWM7 567 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 CEP128Q6ZU80 1094 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 C17orf64Q86WR6 236 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 RELL1Q8IUW5 271 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 DTWD1Q8N5C7 304 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 OR56A3Q8NH54 315 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 FAM117AQ9C073 453 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 TSPYL1Q9H0U9 437 aa14.9□□□□□ -0.02
HMGA1-206ENST00000478214 CDC42EP4Q9H3Q1 356 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms