RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PDE9AO76083 593 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 S1PR4O95977 384 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 IGHG3P01860 377 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 TUBB4AP04350 444 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 MMEP08473 750 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 SLC9A1P19634 815 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 PRLHRP49683 370 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 HLCSP50747 726 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 ITGA8P53708 1063 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 PLGLB1Q02325 96 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 TRIM14Q14142 442 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 SQLEQ14534 574 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 RTL6Q6ICC9 239 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 DCUN1D2Q6PH85 259 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 PLEKHM3Q6ZWE6 761 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 BTLAQ7Z6A9 289 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 LAPTM4BQ86VI4 370 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 SULF2Q8IWU5 870 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 CFAP206Q8IYR0 622 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 TBC1D21Q8IYX1 336 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 FLVCR1-AS1Q8TAF5 88 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 LINC01560Q8TB33 94 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 ARRDC2Q8TBH0 407 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 TFGQ92734 400 aaPredicted RBP7.54□□□□□ -1.2
USP54-211ENST00000474929 HSPBAP1Q96EW2 488 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 DCUN1D1Q96GG9 259 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 CABS1Q96KC9 395 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 MCEEQ96PE7 176 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 LPAR4Q99677 370 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 TRIM7Q9C029 511 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 ASB8Q9H765 288 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 COG4Q9H9E3 785 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 UGT1A8Q9HAW9 530 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 RBM22Q9NW64 420 aaKnown RBP eCLIP7.54□□□□□ -1.2
USP54-211ENST00000474929 PSD3Q9NYI0 1048 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 ADAM22Q9P0K1 906 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.54□□□□□ -1.2
USP54-211ENST00000474929 ACAD8Q9UKU7 415 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 NFS1Q9Y697 457 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.54□□□□□ -1.2
USP54-211ENST00000474929 NBEAL2Q6ZNJ1 2754 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 ZNF407Q9C0G0 2248 aa7.54□□□□□ -1.2
USP54-211ENST00000474929 DYSFO75923 2080 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 DSCAMO60469 2012 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 A0A1W2PPR1 153 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 PHF2O75151 1096 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 IL2RAP01589 272 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 CREB1P16220 341 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 MCM3P25205 808 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 PON1P27169 355 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 TNNT3P45378 269 aaPredicted RBP7.53□□□□□ -1.2
USP54-211ENST00000474929 MAN2A2P49641 1150 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 KRT85P78386 507 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 CDR2Q01850 454 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 IHHQ14623 411 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 SLC14A2Q15849 920 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 PRR31Q5SQ13 230 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 WASHC2DQ5SRD0 308 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 GARNL3Q5VVW2 1013 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 GK5Q6ZS86 529 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 DET1Q7L5Y6 550 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 NOP9Q86U38 636 aaKnown RBP7.53□□□□□ -1.2
USP54-211ENST00000474929 RPS19BP1Q86WX3 136 aaKnown RBP7.53□□□□□ -1.2
USP54-211ENST00000474929 LACC1Q8IV20 430 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 SHISA5Q8N114 240 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 FAM109AQ8N4B1 249 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 RFLNBQ8N5W9 214 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 LRRC17Q8N6Y2 441 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 OR52N2Q8NGI0 321 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 ZUFSPQ96AP4 578 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 ZNF653Q96CK0 615 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 TRMT61AQ96FX7 289 aaKnown RBP7.53□□□□□ -1.2
USP54-211ENST00000474929 KCNK17Q96T54 332 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 VPS16Q9H269 839 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 OR52A5Q9H2C5 316 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 UGT1A7Q9HAW7 530 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 IL26Q9NPH9 171 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 TIMMDC1Q9NPL8 285 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 ZNF226Q9NYT6 803 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 CWC15Q9P013 229 aaKnown RBP7.53□□□□□ -1.2
USP54-211ENST00000474929 HACD3Q9P035 362 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 HOOK1Q9UJC3 728 aaKnown RBP7.53□□□□□ -1.2
USP54-211ENST00000474929 ASF1AQ9Y294 204 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 PKP3Q9Y446 797 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 WNK1Q9H4A3 2382 aa7.53□□□□□ -1.2
USP54-211ENST00000474929 ARHGAP21Q5T5U3 1957 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 EEF1E1-BLOC1S5C9J1V9 151 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 EEF1E1O43324 174 aaKnown RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 HCN1O60741 890 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 VPS26AO75436 327 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 RPN2P04844 631 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 PNMA6AP0CW24 399 aaPredicted RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 CCNCP24863 283 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 TPP2P29144 1249 aaPredicted RBP7.52□□□□□ -1.21
USP54-211ENST00000474929 OPRM1P35372 400 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 IDUAP35475 653 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 TIMP3P35625 211 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 SLC26A3P40879 764 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 RFC3P40938 356 aa7.52□□□□□ -1.21
USP54-211ENST00000474929 CCNFP41002 786 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms