RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CDC23Q9UJX2 597 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 DHRS7Q9Y394 339 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 COMMD10Q9Y6G5 202 aa15.02■□□□□ -0
CCDC88B-205ENST00000472524 SCN2AQ99250 2005 aa15.02□□□□□ -0.01
CCDC88B-205ENST00000472524 PRRC2CQ9Y520 2896 aaKnown RBP15.02□□□□□ -0.01
CCDC88B-205ENST00000472524 USP27XA6NNY8 438 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 ZNF839A8K0R7 811 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 TCP11X1B4DZS4 312 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 ALOX12BO75342 701 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 VPS26AO75436 327 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 SLC16A8O95907 504 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 IGHEP01854 428 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 ALBP02768 609 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 ENO3P13929 434 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 TCP1P17987 556 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 HSD17B2P37059 387 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 MRPL49Q13405 166 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 VWA5B1Q5TIE3 1220 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 GALNT16Q8N428 558 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 RBMXL3Q8N7X1 1067 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 ZNF480Q8WV37 535 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 CABS1Q96KC9 395 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 NDNQ99608 321 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 SPSB2Q99619 263 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 SMAD5Q99717 465 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 PLCD4Q9BRC7 762 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 WDR54Q9H977 334 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 KLHL42Q9P2K6 505 aa15.01□□□□□ -0.01
CCDC88B-205ENST00000472524 UNC79Q9P2D8 2635 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 IGKV1-8A0A0C4DH67 115 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 H0YGG7 62 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 AGPSO00116 658 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 SMAPO00193 183 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 ZBTB14O43829 449 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 CCNDBP1O95273 360 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 ONECUT2O95948 504 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 MMP11P24347 488 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 ARF3P61204 181 aaPredicted RBP15□□□□□ -0.01
CCDC88B-205ENST00000472524 MYBPC3Q14896 1274 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 BBS9Q3SYG4 887 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 MSS51Q4VC12 460 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 THEMIS2Q5TEJ8 643 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 ICE2Q659A1 982 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 SLC6A19Q695T7 634 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 FBXO42Q6P3S6 717 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 UBE2R2Q712K3 238 aaPredicted RBP15□□□□□ -0.01
CCDC88B-205ENST00000472524 ADCK2Q7Z695 626 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 PCGF5Q86SE9 256 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 PAQR7Q86WK9 346 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 KLHL7Q8IXQ5 586 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 PRSS58Q8IYP2 241 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 ASB11Q8WXH4 323 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 C10orf90Q96M02 699 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 SLC26A1Q9H2B4 701 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 ZNF304Q9HCX3 659 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 SLAMF7Q9NQ25 335 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 ENAMQ9NRM1 1142 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 MAP10Q9P2G4 905 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 TRMT6Q9UJA5 497 aaKnown RBP15□□□□□ -0.01
CCDC88B-205ENST00000472524 FBXL4Q9UKA2 621 aa15□□□□□ -0.01
CCDC88B-205ENST00000472524 SVILO95425 2214 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 A1L4Q6 167 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 E7ENX8 843 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 GFYI3L273 518 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 FBLP22087 321 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 ITGA3P26006 1051 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 IMPA1P29218 277 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 TAP2Q03519 686 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 PRDX1Q06830 199 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 RBBP7Q16576 425 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 MUM1Q2TAK8 710 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 EIF2S3LQ2VIR3 472 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 SPANXN3Q5MJ09 141 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 HP1BP3Q5SSJ5 553 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 UGT3A1Q6NUS8 523 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 CYHR1Q6ZMK1 362 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 HPS6Q86YV9 775 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 CSNK1A1LQ8N752 337 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 FBXO15Q8NCQ5 510 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 C2CD4AQ8NCU7 369 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 GABPB2Q8TAK5 448 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 SLCO2A1Q92959 643 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 EBNA1BP2Q99848 306 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 SYNPO2LQ9H987 977 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 ATP13A2Q9NQ11 1180 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 CUEDC1Q9NWM3 386 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 UTP6Q9NYH9 597 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 SLC17A6Q9P2U8 582 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 PCYOX1Q9UHG3 505 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 NXT1Q9UKK6 140 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 HS3ST3B1Q9Y662 390 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 NOTCH2Q04721 2471 aa14.99□□□□□ -0.01
CCDC88B-205ENST00000472524 SOCS6O14544 535 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 TTC4O95801 387 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 ALPPP05187 535 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 SKIV2L2P42285 1042 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 CARSP49589 748 aaKnown RBP14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 GNG11P61952 73 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 OCA2Q04671 838 aa14.98□□□□□ -0.01
CCDC88B-205ENST00000472524 AIMP2Q13155 320 aaKnown RBP14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms