RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 ICKQ9UPZ9 632 aa9.06□□□□□ -0.96
VPS52-216ENST00000471309 COLEC10Q9Y6Z7 277 aa9.06□□□□□ -0.96
VPS52-216ENST00000471309 FAM234BA2RU67 622 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 STK25O00506 426 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 FBP2O00757 339 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 MRASO14807 208 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 AIM2O14862 343 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 ANGPT2O15123 496 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 AXIN1O15169 862 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 MGRN1O60291 552 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 NRP2O60462 931 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 SEC22BO75396 215 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 EML2O95834 649 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 G6PDP11413 515 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 PRPS2P11908 318 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 CDH1P12830 882 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 CAPN3P20807 821 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 AK4P27144 223 aaPredicted RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 SERPINB1P30740 379 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 SHMT2P34897 504 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 ZFP36L2P47974 494 aaKnown RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 PXNP49023 591 aaPredicted RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 BLKP51451 505 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 NEK2P51955 445 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 KCNK10P57789 538 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 RACK1P63244 317 aaKnown RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 ZXDAP98168 799 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 TBL3Q12788 808 aaKnown RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 RIPK1Q13546 671 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 HIST2H2ACQ16777 129 aaPredicted RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 MMEL1Q495T6 779 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 USP39Q53GS9 565 aaKnown RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 HIST2H2AA3Q6FI13 130 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 SLC30A9Q6PML9 568 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 FAM129CQ86XR2 697 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 NRROSQ86YC3 692 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 C10orf67Q8IYJ2 551 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 ULK2Q8IYT8 1036 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 PHACTR4Q8IZ21 702 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 DEFB107AQ8IZN7 70 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 DSELQ8IZU8 1212 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 LMNTD1Q8N9Z9 388 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 MFSD2AQ8NA29 543 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 LINC01555Q8NAE3 123 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 PCYOX1LQ8NBM8 494 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 ABHD11Q8NFV4 315 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 OR7G3Q8NG95 312 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 CCL4L1Q8NHW4 92 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 HUS1BQ8NHY5 278 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 PROKR1Q8TCW9 393 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 ZFPM2Q8WW38 1151 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 MTFMTQ96DP5 389 aaKnown RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 NPAS2Q99743 824 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 THTPAQ9BU02 230 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 PITHD1Q9GZP4 211 aaPredicted RBP9.05□□□□□ -0.96
VPS52-216ENST00000471309 ACTL8Q9H568 366 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 SLC52A3Q9NQ40 469 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 AASDHPPTQ9NRN7 309 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 POT1Q9NUX5 634 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 TAC3Q9UHF0 121 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 PPT2Q9UMR5 302 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 NDUFAF1Q9Y375 327 aa9.05□□□□□ -0.96
VPS52-216ENST00000471309 A0A088AWK7 358 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 CCDC163A0A0D9SF12 145 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 A0A1W2PP18 115 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 A0A1W2PR77 199 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 FOXE1O00358 373 aaPredicted RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 PRICKLE3O43900 615 aaPredicted RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 EEDO75530 441 aaKnown RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 CCNDBP1O95273 360 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 DCNP07585 359 aaKnown RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 PCNAP12004 261 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 BCKDHAP12694 445 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 CXCR2P25025 360 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 CD38P28907 300 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 HOXA6P31267 233 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 PIK3CBP42338 1070 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 CCR8P51685 355 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 POLR2JP52435 117 aaKnown RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 NME5P56597 212 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 UFM1P61960 85 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 PHEXP78562 749 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 ABATP80404 500 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 REEP5Q00765 189 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 RPL6Q02878 288 aaKnown RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 ART3Q13508 389 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 SPIN4Q56A73 249 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 WASHC2DQ5SRD0 308 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 ICE2Q659A1 982 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 CWF19L1Q69YN2 538 aaKnown RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 C8orf82Q6P1X6 216 aaPredicted RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 PGM2L1Q6PCE3 622 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 BNC2Q6ZN30 1099 aaPredicted RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 NET1Q7Z628 596 aaPredicted RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 SCUBE1Q8IWY4 988 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 KRT78Q8N1N4 520 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 LIX1Q8N485 282 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 GLB1L3Q8NCI6 653 aaPredicted RBP9.04□□□□□ -0.96
VPS52-216ENST00000471309 OR2A1Q8NGT9 310 aa9.04□□□□□ -0.96
VPS52-216ENST00000471309 SH3KBP1Q96B97 665 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms