RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 CCSMST1Q4G0I0 132 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 PAGE2BQ5JRK9 111 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 C10orf62Q5T681 223 aaPredicted RBP10.28□□□□□ -0.76
UBR4-208ENST00000459947 PRMT9Q6P2P2 845 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 CDHR3Q6ZTQ4 885 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 IL22RA1Q8N6P7 574 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 CNTNAP3BQ96NU0 1288 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 CCNL2Q96S94 520 aaPredicted RBP10.28□□□□□ -0.76
UBR4-208ENST00000459947 CNTNAP3Q9BZ76 1288 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 VPS11Q9H270 941 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 ADGRE2Q9UHX3 823 aa10.28□□□□□ -0.76
UBR4-208ENST00000459947 KCNE1BA0A087WTH5 132 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 TRBC2A0A5B9 178 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 ZSCAN9O15535 394 aaPredicted RBP10.27□□□□□ -0.76
UBR4-208ENST00000459947 CYC1P08574 325 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 GABRA4P48169 554 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 TGFBIQ15582 683 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 MUM1Q2TAK8 710 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 TRIM73Q86UV7 250 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 TAX1BP1Q86VP1 789 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 ABHD11Q8NFV4 315 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 SLC5A11Q8WWX8 675 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 FKBP10Q96AY3 582 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 CCDC126Q96EE4 140 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 MED8Q96G25 268 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 MRPL57Q9BQC6 102 aaKnown RBP10.27□□□□□ -0.76
UBR4-208ENST00000459947 TMEM109Q9BVC6 243 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 SPRY4Q9C004 299 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 SENP1Q9P0U3 644 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 GPN3Q9UHW5 284 aaPredicted RBP10.27□□□□□ -0.76
UBR4-208ENST00000459947 NXT1Q9UKK6 140 aaKnown RBP10.27□□□□□ -0.76
UBR4-208ENST00000459947 ZMIZ1Q9ULJ6 1067 aa10.27□□□□□ -0.76
UBR4-208ENST00000459947 KNTC1P50748 2209 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 FITM1A5D6W6 292 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 SUPT3HB4E1H0 165 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 H3BQF6 201 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 CDC7O00311 574 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 TLX3O43711 291 aaPredicted RBP10.27□□□□□ -0.77
UBR4-208ENST00000459947 KLHL41O60662 606 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 SUPT3HO75486 399 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 FAM155BO75949 473 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 KIAA0754O94854 1291 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 GNAZP19086 355 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 GPR19Q15760 415 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 HIST2H2ACQ16777 129 aaPredicted RBP10.27□□□□□ -0.77
UBR4-208ENST00000459947 KIAA1614Q5VZ46 1190 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 HIST2H2AA3Q6FI13 130 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 RHBDD2Q6NTF9 364 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 TMEM207Q6UWW9 146 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 RHBDF1Q96CC6 855 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 CATSPER2Q96P56 530 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 IP6K3Q96PC2 410 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 EFCAB11Q9BUY7 163 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 CAB39LQ9H9S4 337 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 DCDC2Q9UHG0 476 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 SYNDIG1LA6NDD5 238 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 GLRA3O75311 464 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 KATNA1O75449 491 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 STK16O75716 305 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 AHRP35869 848 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 SLC6A12P48065 614 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 VSNL1P62760 191 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 PHEXP78562 749 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 CDC16Q13042 620 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 FCRL6Q6DN72 434 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 ADCK2Q7Z695 626 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 THOC6Q86W42 341 aaKnown RBP10.27□□□□□ -0.77
UBR4-208ENST00000459947 MARCH9Q86YJ5 346 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 C7orf57Q8NEG2 295 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 STMN4Q9H169 189 aaPredicted RBP10.27□□□□□ -0.77
UBR4-208ENST00000459947 IGSF5Q9NSI5 407 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 FOXJ2Q9P0K8 574 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 PCDHGA6Q9Y5G7 932 aa10.27□□□□□ -0.77
UBR4-208ENST00000459947 STX16-NPEPL1H3BU86 382 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 STX16O14662 325 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 DSCR3O14972 297 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 ONECUT2O95948 504 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 FAM153BP0C7A2 387 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 PVRP15151 417 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 STAT5AP42229 794 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 ALDH18A1P54886 795 aaKnown RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 RPS15P62841 145 aaKnown RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 RGS1Q08116 209 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 PCDH1Q08174 1060 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 ASPHQ12797 758 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 BMPR2Q13873 1038 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 FAM153CQ494X1 144 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 LRRN4CLQ8ND94 238 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 ANKRD49Q8WVL7 239 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 CLIP3Q96DZ5 547 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 SCYL1Q96KG9 808 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 MRPL46Q9H2W6 279 aaKnown RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 PILRAQ9UKJ1 303 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 SSUH2Q9Y2M2 353 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 ANGPTL3Q9Y5C1 460 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 F7P08709 466 aaPredicted RBP10.26□□□□□ -0.77
UBR4-208ENST00000459947 SH3BP2P78314 561 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 TGM3Q08188 693 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 CLN3Q13286 438 aa10.26□□□□□ -0.77
UBR4-208ENST00000459947 CMC1Q7Z7K0 106 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms