RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ARHGAP19Q14CB8 494 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 OASLQ15646 514 aaKnown RBP12.66□□□□□ -0.38
HMGB3-204ENST00000448905 LONRF1Q17RB8 773 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 GFRALQ6UXV0 394 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 RNF44Q7L0R7 432 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 GSTA5Q7RTV2 222 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 OR9A1PQ8NGU1 263 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 LKAAEAR1Q8TD35 194 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 C1orf54Q8WWF1 131 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 METTL21AQ8WXB1 218 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 C8orf44Q96CB5 159 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 MMABQ96EY8 250 aaPredicted RBP12.66□□□□□ -0.38
HMGB3-204ENST00000448905 PHF12Q96QT6 1004 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 EBNA1BP2Q99848 306 aaKnown RBP12.66□□□□□ -0.38
HMGB3-204ENST00000448905 PLCD4Q9BRC7 762 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 ACAT2Q9BWD1 397 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 MKKSQ9NPJ1 570 aaPredicted RBP12.66□□□□□ -0.38
HMGB3-204ENST00000448905 RIC8BQ9NVN3 520 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 MARCH4Q9P2E8 410 aaPredicted RBP12.66□□□□□ -0.38
HMGB3-204ENST00000448905 VPS9D1Q9Y2B5 631 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 NFS1Q9Y697 457 aa12.66□□□□□ -0.38
HMGB3-204ENST00000448905 RP1L1Q8IWN7 2480 aaPredicted RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 PIKFYVEQ9Y2I7 2098 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 OR2A25A4D2G3 310 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 E2F3O00716 465 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 VAPBO95292 243 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 RASAL1O95294 804 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 MATN4O95460 622 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 PSMB5P28074 263 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 ATP5DP30049 168 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 BDKRB1P46663 353 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 ABATP80404 500 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 SARNPP82979 210 aaKnown RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 RELAQ04206 551 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 PRDX1Q06830 199 aaKnown RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 TSTA3Q13630 321 aaPredicted RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 CCNG2Q16589 344 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 NDUFA9Q16795 377 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 PRTGQ2VWP7 1150 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 CCSMST1Q4G0I0 132 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 ABHD17BQ5VST6 288 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 LAPTM4BQ86VI4 370 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 SLC13A5Q86YT5 568 aaPredicted RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 CSNK1A1LQ8N752 337 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 MCOLN3Q8TDD5 553 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 BRIX1Q8TDN6 353 aaKnown RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 NR4A3Q92570 626 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 TRIM56Q9BRZ2 755 aaKnown RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 TGIF2Q9GZN2 237 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 CHST11Q9NPF2 352 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 EIF2B3Q9NR50 452 aaKnown RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 PLA2G3Q9NZ20 509 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 STOX2Q9P2F5 926 aaPredicted RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 KLF2Q9Y5W3 355 aaPredicted RBP12.65□□□□□ -0.38
HMGB3-204ENST00000448905 CRYBG3Q68DQ2 2970 aa12.65□□□□□ -0.38
HMGB3-204ENST00000448905 CELSR2Q9HCU4 2923 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 IGHV1-45A0A0A0MS14 117 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 TRGV8A0A0C4DH27 118 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 E5RI56 91 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 MLYCDO95822 493 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 CATP04040 527 aaKnown RBP12.64□□□□□ -0.39
HMGB3-204ENST00000448905 ETS1P14921 441 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 EZRP15311 586 aaKnown RBP12.64□□□□□ -0.39
HMGB3-204ENST00000448905 PAMP19021 973 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 RPL22P35268 128 aaKnown RBP12.64□□□□□ -0.39
HMGB3-204ENST00000448905 SLC26A3P40879 764 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 AVPR1BP47901 424 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 ADARP55265 1226 aaKnown RBP12.64□□□□□ -0.39
HMGB3-204ENST00000448905 BASP1P80723 227 aaKnown RBP12.64□□□□□ -0.39
HMGB3-204ENST00000448905 CDK16Q00536 496 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 TTLL9Q3SXZ7 439 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 FAAH2Q6GMR7 532 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 LRRC8BQ6P9F7 803 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 SIRT6Q8N6T7 355 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 MAIP1Q8WWC4 291 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 PSMF1Q92530 271 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 TUBB6Q9BUF5 446 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 DRC3Q9H069 523 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 TREX1Q9NSU2 369 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 ABI3Q9P2A4 366 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 SEC14L3Q9UDX4 400 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 MKL2Q9ULH7 1088 aa12.64□□□□□ -0.39
HMGB3-204ENST00000448905 PRRC2CQ9Y520 2896 aaKnown RBP12.63□□□□□ -0.39
HMGB3-204ENST00000448905 A0A1W2PPV9 198 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 A0A1W2PQ72 361 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 MAGEB16A2A368 324 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 CCL21O00585 134 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 ZBTB14O43829 449 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 UNC5CO95185 931 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 COX6A1P12074 109 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 HRH2P25021 359 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 NMBRP28336 390 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 SOX11P35716 441 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 PNLIPRP1P54315 467 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 KCNK10P57789 538 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 CRADDP78560 199 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 FAM53BQ14153 422 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 FASTKQ14296 549 aaKnown RBP12.63□□□□□ -0.39
HMGB3-204ENST00000448905 RPS6KA1Q15418 735 aa12.63□□□□□ -0.39
HMGB3-204ENST00000448905 THEMIS2Q5TEJ8 643 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms