RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 GPN2Q9H9Y4 310 aaPredicted RBP11.53□□□□□ -0.56
MSH6-204ENST00000445503 TMCC3Q9ULS5 477 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 RGPD3A6NKT7 1758 aaPredicted RBP11.53□□□□□ -0.56
MSH6-204ENST00000445503 RGPD4Q7Z3J3 1758 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 EFCAB10A6NFE3 127 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 CAPNS1P04632 268 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 CCDC159P0C7I6 412 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 GABRR2P28476 465 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 C21orf33P30042 268 aaPredicted RBP11.53□□□□□ -0.56
MSH6-204ENST00000445503 FKBP1BP68106 108 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 DUOXA1Q1HG43 343 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 ADPRMQ3LIE5 342 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 TRMT11Q7Z4G4 463 aaKnown RBP11.53□□□□□ -0.56
MSH6-204ENST00000445503 UBE2J2Q8N2K1 259 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 PAPD5Q8NDF8 572 aaKnown RBP11.53□□□□□ -0.56
MSH6-204ENST00000445503 WDR36Q8NI36 951 aaKnown RBP11.53□□□□□ -0.56
MSH6-204ENST00000445503 SCAMP4Q969E2 229 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 SCLYQ96I15 445 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 IL4I1Q96RQ9 567 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 SMAD5Q99717 465 aaKnown RBP11.53□□□□□ -0.56
MSH6-204ENST00000445503 TM9SF3Q9HD45 589 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 MYO7AQ13402 2215 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 AXIN1O15169 862 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 PRPS1L1P21108 318 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 HNF4AP41235 474 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 MLLT10P55197 1068 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 GP2P55259 537 aaKnown RBP11.53□□□□□ -0.56
MSH6-204ENST00000445503 MXD1Q05195 221 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 GRSF1Q12849 480 aaKnown RBP eCLIP11.53□□□□□ -0.56
MSH6-204ENST00000445503 DSC3Q14574 896 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 TAB1Q15750 504 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 ZNF691Q5VV52 312 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 LYPLAL1Q5VWZ2 237 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 RFLNAQ6ZTI6 216 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 PTCHD4Q6ZW05 846 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 CSGALNACT1Q8TDX6 532 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 PLD4Q96BZ4 506 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 RIMKLBQ9ULI2 386 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 BTBD3Q9Y2F9 522 aa11.53□□□□□ -0.56
MSH6-204ENST00000445503 LCTP09848 1927 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 LOC110117498-PIK3R3F6TDL0 507 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 CLDN8P56748 225 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 CREMQ03060 361 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 ZNF404Q494X3 552 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 ATP13A5Q4VNC0 1218 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 XAF1Q6GPH4 301 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 FAM180BQ6P0A1 224 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 DHRS4L2Q6PKH6 230 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 TMC5Q6UXY8 1006 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 ARMC8Q8IUR7 673 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 C11orf65Q8NCR3 313 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 KBTBD8Q8NFY9 601 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 OR10G2Q8NGC3 310 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 MUL1Q969V5 352 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 ALPK1Q96QP1 1244 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 VPS29Q9UBQ0 182 aa11.52□□□□□ -0.56
MSH6-204ENST00000445503 CCNKO75909 580 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 CPNE6O95741 557 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 CATP04040 527 aaKnown RBP11.52□□□□□ -0.57
MSH6-204ENST00000445503 BMP4P12644 408 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 SDC1P18827 310 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ATF6P18850 670 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 EPHA2P29317 976 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ATP6V1E1P36543 226 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ISL1P61371 349 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 CAMK2GQ13555 558 aaPredicted RBP11.52□□□□□ -0.57
MSH6-204ENST00000445503 PLEKHG6Q3KR16 790 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.52□□□□□ -0.57
MSH6-204ENST00000445503 USP51Q70EK9 711 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 DNAJB7Q7Z6W7 309 aaPredicted RBP11.52□□□□□ -0.57
MSH6-204ENST00000445503 GPR149Q86SP6 731 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ANKRD13BQ86YJ7 626 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ZNF683Q8IZ20 524 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 SLC34A3Q8N130 599 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 WBP2Q969T9 261 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ITPAQ9BY32 194 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ZBTB20Q9HC78 741 aaPredicted RBP11.52□□□□□ -0.57
MSH6-204ENST00000445503 SLC25A13Q9UJS0 675 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 RNF6Q9Y252 685 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 FAM220BPB1ANY3 271 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 DNTTP04053 509 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 STSP08842 583 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 NUDT7P0C024 238 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 LAMP1P11279 417 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ITIH1P19827 911 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ACRV1P26436 265 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 GABARAPL2P60520 117 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 PPP2R2BQ00005 443 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 NPRL3Q12980 569 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 TPRG1LQ5T0D9 272 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 ERICH5Q6P6B1 374 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 TMEM173Q86WV6 379 aaPredicted RBP11.52□□□□□ -0.57
MSH6-204ENST00000445503 KLHDC8BQ8IXV7 354 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 SLC7A5P1Q8MH63 180 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 VANGL1Q8TAA9 524 aaPredicted RBP11.52□□□□□ -0.57
MSH6-204ENST00000445503 CLP1Q92989 425 aaKnown RBP11.52□□□□□ -0.57
MSH6-204ENST00000445503 SMG9Q9H0W8 520 aaKnown RBP11.52□□□□□ -0.57
MSH6-204ENST00000445503 ABCB8Q9NUT2 735 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 TRPS1Q9UHF7 1281 aa11.52□□□□□ -0.57
MSH6-204ENST00000445503 SIP14410 1827 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms