RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TMEM126BQ8IUX1 230 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 OR5K1Q8NHB7 308 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 SLC22A8Q8TCC7 542 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 METTL8Q9H825 291 aaKnown RBP15.02■□□□□ -0
PTPRF-206ENST00000429895 IGSF9Q9P2J2 1179 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 IQGAP1P46940 1657 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 VSTM5A8MXK1 200 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 BPNT1O95861 308 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 GBAP04062 536 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 SNHG28P0DPA3 235 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.02■□□□□ -05e-8■■□□□ 12.6
PTPRF-206ENST00000429895 THOC7Q6I9Y2 204 aaKnown RBP15.02■□□□□ -0
PTPRF-206ENST00000429895 CNDP2Q96KP4 475 aaKnown RBP15.02■□□□□ -0
PTPRF-206ENST00000429895 ZSCAN5AQ9BUG6 496 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 MEMO1Q9Y316 297 aa15.02■□□□□ -0
PTPRF-206ENST00000429895 ARL3P36405 182 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 RAB8AP61006 207 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 HERVK_113P63132 956 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 KIAA0930Q6ICG6 404 aaPredicted RBP15.02□□□□□ -0.01
PTPRF-206ENST00000429895 FBXL22Q6P050 247 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 CNKSR3Q6P9H4 555 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 GKN2Q86XP6 184 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 IRF2BP1Q8IU81 584 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 PHOSPHO1Q8TCT1 267 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 IL4I1Q96RQ9 567 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 ERVK-6Q9BXR3 956 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 ZNF358Q9NW07 568 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 PLEKHA6Q9Y2H5 1048 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 RAP2AP10114 183 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 THOC6Q86W42 341 aaKnown RBP15.02□□□□□ -0.01
PTPRF-206ENST00000429895 CMTM8Q8IZV2 173 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 GLB1L3Q8NCI6 653 aaPredicted RBP15.02□□□□□ -0.01
PTPRF-206ENST00000429895 OR52E4Q8NGH9 312 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 TMEM203Q969S6 136 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 NXPE2Q96DL1 559 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 EBF3Q9H4W6 596 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 RPL26L1Q9UNX3 145 aaKnown RBP15.02□□□□□ -0.01
PTPRF-206ENST00000429895 TNFRSF10BO14763 440 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 PPEF2O14830 753 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 POP7O75817 140 aaKnown RBP15.02□□□□□ -0.01
PTPRF-206ENST00000429895 TACSTD2P09758 323 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 ID2Q02363 134 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 ASB18Q6ZVZ8 466 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 PIM3Q86V86 326 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 FITM2Q8N6M3 262 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 FUBP3Q96I24 572 aaKnown RBP eCLIP15.02□□□□□ -0.01
PTPRF-206ENST00000429895 PCDHAC1Q9H158 963 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 SPATA7Q9P0W8 599 aa15.02□□□□□ -0.01
PTPRF-206ENST00000429895 IGLV3-22A0A075B6J6 115 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 PCP4L1A6NKN8 68 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 CYP11A1P05108 521 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 ITGA5P08648 1049 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 PTX3P26022 381 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 MTTPP55157 894 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 RBM48Q5RL73 367 aaKnown RBP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 ZNF776Q68DI1 518 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 NOXRED1Q6NXP6 359 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 NFKBIDQ8NI38 313 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 CMTM7Q96FZ5 175 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 TM9SF2Q99805 663 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 TMED9Q9BVK6 235 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 ITGA10O75578 1167 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 OAZ2O95190 189 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 FUT2Q10981 343 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 METTL21CQ5VZV1 264 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 ZNF554Q86TJ5 538 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 SLC30A8Q8IWU4 369 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 JAGN1Q8N5M9 183 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 RC3H2Q9HBD1 1191 aaKnown RBP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 UCKL1Q9NWZ5 548 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 PEX16Q9Y5Y5 336 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 S100A1P23297 94 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 RORCP51449 518 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 SLC3A1Q07837 685 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 CRTAC1Q9NQ79 661 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 PIM1P11309 404 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 DCDC1P59894 354 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 MFSD5Q6N075 450 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 ACDQ96AP0 544 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 RBCK1Q9BYM8 510 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 RNF39Q9H2S5 420 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 RBPJLQ9UBG7 517 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 FBXO9Q9UK97 447 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 SLC35F4A4IF30 521 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 OR2AT4A6NND4 320 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 BLOC1S5-TXNDC5H3BN57 136 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 AQP4P55087 323 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 MYLK3Q32MK0 819 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 EIF2B3Q9NR50 452 aaKnown RBP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 TLR9Q9NR96 1032 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 DNAJB9Q9UBS3 223 aa15.01□□□□□ -0.01
PTPRF-206ENST00000429895 RPL36Q9Y3U8 105 aaKnown RBP15.01□□□□□ -0.01
PTPRF-206ENST00000429895 SLC33A1O00400 549 aaPredicted RBP15□□□□□ -0.01
PTPRF-206ENST00000429895 JMJD7P0C870 316 aa15□□□□□ -0.01
PTPRF-206ENST00000429895 RNF144AP50876 292 aaPredicted RBP15□□□□□ -0.01
PTPRF-206ENST00000429895 PRMT2P55345 433 aa15□□□□□ -0.01
PTPRF-206ENST00000429895 GRHL1Q9NZI5 618 aa15□□□□□ -0.01
PTPRF-206ENST00000429895 NOCTQ9UK39 431 aaKnown RBP15□□□□□ -0.01
PTPRF-206ENST00000429895 TLL2Q9Y6L7 1015 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms