RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 FRG2BQ96QU4 278 aa8.29□□□□□ -1.08
SYNE1-211ENST00000413186 KCTD14Q9BQ13 255 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-211ENST00000413186 TIMM29Q9BSF4 260 aa8.29□□□□□ -1.08
SYNE1-211ENST00000413186 LRRC3Q9BY71 257 aa8.29□□□□□ -1.08
SYNE1-211ENST00000413186 RSPH9Q9H1X1 276 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-211ENST00000413186 HPS4Q9NQG7 708 aa8.29□□□□□ -1.08
SYNE1-211ENST00000413186 TAC3Q9UHF0 121 aa8.29□□□□□ -1.08
SYNE1-211ENST00000413186 TYROBPO43914 113 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ERAL1O75616 437 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 C1SP09871 688 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 OPRD1P41143 372 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 MAPK12P53778 367 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 KLF10Q13118 480 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 NFATC4Q14934 902 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 IRF4Q15306 451 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 LRRC36Q1X8D7 754 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 DPY19L1Q2PZI1 675 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 FAM98BQ52LJ0 330 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 FBXO48Q5FWF7 155 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 C9orf64Q5T6V5 341 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 DENND5AQ6IQ26 1287 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ABRAXAS1Q6UWZ7 409 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 MBOAT1Q6ZNC8 495 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ULK2Q8IYT8 1036 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 TBC1D21Q8IYX1 336 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF781Q8N8C0 355 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 GLB1L3Q8NCI6 653 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 OR4E2Q8NGC2 313 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 PTCD3Q96EY7 689 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ZDHHC12Q96GR4 267 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 HSPA12BQ96MM6 686 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 C9orf16Q9BUW7 83 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 NMUR2Q9GZQ4 415 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 C3orf14Q9HBI5 128 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 SEMA3GQ9NS98 782 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 PLCL2Q9UPR0 1127 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 CFAP20Q9Y6A4 193 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 SIX3O95343 332 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 PTX3P26022 381 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 PIK3R1P27986 724 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 S100A5P33763 92 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 KIR3DL1P43629 444 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 NFKB2Q00653 900 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 KLHL12Q53G59 568 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 CLEC6AQ6EIG7 209 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 RIPOR1Q6ZS17 1223 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ZBTB49Q6ZSB9 765 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 PIANPQ8IYJ0 282 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 NATD1Q8N6N6 113 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 POU5F2Q8N7G0 328 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 OR6Y1Q8NGX8 325 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ACTRT2Q8TDY3 377 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 USP7Q93009 1102 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 CMTM7Q96FZ5 175 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 TSSK3Q96PN8 268 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 FAM192AQ9GZU8 254 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF556Q9HAH1 456 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 VPS4AQ9UN37 437 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 OAS3Q9Y6K5 1087 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 TBX10O75333 385 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF8P17098 575 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 VARSP26640 1264 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 AVPR1BP47901 424 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 RAD23AP54725 363 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 HERC3Q15034 1050 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 IL23RQ5VWK5 629 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 NIPAL1Q6NVV3 410 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ZCCHC8Q6NZY4 707 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 PARGQ86W56 976 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 WDR55Q9H6Y2 383 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 GALPQ9UBC7 116 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 POFUT2Q9Y2G5 429 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 THSD7BQ9C0I4 1608 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ATP6V1C1P21283 382 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 CDKN2DP55273 166 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 SRP54P61011 504 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF648Q5T619 568 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 TMEM164Q5U3C3 297 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 METTL2BQ6P1Q9 378 aaKnown RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 TMIGD1Q6UXZ0 262 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ADAMTSL4Q6UY14 1074 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 DNAJC14Q6Y2X3 702 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF534Q76KX8 674 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 CYP4Z1Q86W10 505 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 PLD3Q8IV08 490 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ADHFE1Q8IWW8 467 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 DCBLD1Q8N8Z6 715 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 FAM13CQ8NE31 585 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 COL26A1Q96A83 441 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 OR52E6Q96RD3 313 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 IER2Q9BTL4 223 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 BOCQ9BWV1 1114 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 ARL8BQ9NVJ2 186 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 SNX13Q9Y5W8 968 aa8.28□□□□□ -1.08
SYNE1-211ENST00000413186 C17orf113A0A1B0GUU1 675 aa8.27□□□□□ -1.09
SYNE1-211ENST00000413186 FAM47E-STBD1D6RA91 191 aa8.27□□□□□ -1.09
SYNE1-211ENST00000413186 PIP5K1BO14986 540 aa8.27□□□□□ -1.09
SYNE1-211ENST00000413186 DNAJA2O60884 412 aa8.27□□□□□ -1.09
SYNE1-211ENST00000413186 PRLP01236 227 aa8.27□□□□□ -1.09
SYNE1-211ENST00000413186 F7P08709 466 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms