RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SORDQ00796 357 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 PRKAA1Q13131 559 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 PDK3Q15120 406 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 CLPPQ16740 277 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-204ENST00000399489 SMTNL2Q2TAL5 461 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 SGO1Q5FBB7 561 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 TTC19Q6DKK2 380 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-204ENST00000399489 CEP85Q6P2H3 762 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 TECPR1Q7Z6L1 1165 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 TMCO2Q7Z6W1 182 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-204ENST00000399489 BIVMQ86UB2 503 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 TRIM74Q86UV6 250 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 TRIM73Q86UV7 250 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 SPATA24Q86W54 205 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 ZBTB2Q8N680 514 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 STKLD1Q8NE28 680 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 OR4N2Q8NGD1 307 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 LILRB4Q8NHJ6 448 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 EXD1Q8NHP7 514 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 HDAC7Q8WUI4 952 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 OIT3Q8WWZ8 545 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 DPF1Q92782 380 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 LINGO1Q96FE5 620 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 IFT74Q96LB3 600 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 HARBI1Q96MB7 349 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 SLITRK1Q96PX8 696 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 ACOX2Q99424 681 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 SEPHS2Q99611 448 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 GLT8D2Q9H1C3 349 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 TMEM231Q9H6L2 316 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 MYNNQ9NPC7 610 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.94□□□□□ -1.784e-6■□□□□ 9.4
HMGB1-204ENST00000399489 TBC1D7Q9P0N9 293 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 KLHL8Q9P2G9 620 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-204ENST00000399489 MALT1Q9UDY8 824 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 COMMD3-BMI1R4GMX3 469 aa3.94□□□□□ -1.78
HMGB1-204ENST00000399489 PHLPP2Q6ZVD8 1323 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 A0A0U1RQV5 110 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 H0YHG0 523 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 OGTO15294 1046 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 FLRT2O43155 660 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ADAM12O43184 909 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 LRRTM2O43300 516 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 CIDEAO60543 219 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 RAD51DO75771 328 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 BMP15O95972 392 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 OTCP00480 354 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ASNSP08243 561 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ANKRD34CP0C6C1 535 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 CKMT2P17540 419 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ATP6V1C1P21283 382 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 CPN2P22792 545 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 NPBWR1P48145 328 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 HSF2Q03933 536 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 HSPA14Q0VDF9 509 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 NAE1Q13564 534 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 PDIA5Q14554 519 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 TBC1D25Q3MII6 688 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 LRIT3Q3SXY7 679 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 XKR3Q5GH77 459 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ARMC12Q5T9G4 340 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 NCR3LG1Q68D85 454 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ZNF425Q6IV72 752 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 KIF6Q6ZMV9 814 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 PQLC2Q6ZP29 291 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 TRILQ7L0X0 811 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 CENPQQ7L2Z9 268 aaPredicted RBP3.93□□□□□ -1.78
HMGB1-204ENST00000399489 IRF2BP2Q7Z5L9 587 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 NRARPQ7Z6K4 114 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 CERS5Q8N5B7 392 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 TRIML2Q8N7C3 387 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 BCORP1Q8N888 145 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 KIAA0895Q8NCT3 520 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 GJC3Q8NFK1 279 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ATP8B4Q8TF62 1192 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 FAR1Q8WVX9 515 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 DNAJA4Q8WW22 397 aaPredicted RBP3.93□□□□□ -1.78
HMGB1-204ENST00000399489 XAGE5Q8WWM1 108 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 STARD8Q92502 1023 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 TMIGD2Q96BF3 282 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 SLC41A3Q96GZ6 507 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 THOC3Q96J01 351 aaKnown RBP3.93□□□□□ -1.78
HMGB1-204ENST00000399489 VCPIP1Q96JH7 1222 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 TAAR6Q96RI8 345 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ABHD14AQ9BUJ0 271 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 CRNKL1Q9BZJ0 848 aaKnown RBP3.93□□□□□ -1.78
HMGB1-204ENST00000399489 PNNQ9H307 717 aaKnown RBP3.93□□□□□ -1.78
HMGB1-204ENST00000399489 TBC1D17Q9HA65 648 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 VAT1LQ9HCJ6 419 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 ETNK2Q9NVF9 386 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 TFCP2L1Q9NZI6 479 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 NDUFA13Q9P0J0 144 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 STK39Q9UEW8 545 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 IL20RAQ9UHF4 553 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 A3GALT2U3KPV4 340 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 MAP3K19Q56UN5 1328 aa3.93□□□□□ -1.78
HMGB1-204ENST00000399489 WDR27A2RRH5 827 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ANKUB1A6NFN9 424 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 ANKRD61A6NGH8 418 aa3.92□□□□□ -1.78
HMGB1-204ENST00000399489 FAM157AC9JC47 383 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms