RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 DNAJB5O75953 348 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 FDXRP22570 491 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 OTX2P32243 289 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 IL2P60568 153 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 MGAT5Q09328 741 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 FASTKD3Q14CZ7 662 aaKnown RBP16.09■□□□□ 0.17
HMGN4-201ENST00000377575 WASHC2DQ5SRD0 308 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 FRMPD2BQ6IN97 320 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 MRPL14Q6P1L8 145 aaKnown RBP16.09■□□□□ 0.17
HMGN4-201ENST00000377575 MED25Q71SY5 747 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 ADCK2Q7Z695 626 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 SLC26A11Q86WA9 606 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 PAQR7Q86WK9 346 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 PCBD2Q9H0N5 130 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 DPH5Q9H2P9 285 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 WDR54Q9H977 334 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 ABCF3Q9NUQ8 709 aa16.09■□□□□ 0.17
HMGN4-201ENST00000377575 STOX2Q9P2F5 926 aaPredicted RBP16.09■□□□□ 0.17
HMGN4-201ENST00000377575 UTP11Q9Y3A2 253 aaKnown RBP16.09■□□□□ 0.17
HMGN4-201ENST00000377575 TNRC6AQ8NDV7 1962 aaKnown RBP16.09■□□□□ 0.17
HMGN4-201ENST00000377575 IGKV1-8A0A0C4DH67 115 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 HYKKA2RU49 373 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 EIF3HO15372 352 aaKnown RBP eCLIP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 IGHEP01854 428 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 ALBP02768 609 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 EIF2S1P05198 315 aaKnown RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 HIST1H2AGP0C0S8 130 aaPredicted RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 HIST1H2ADP20671 130 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 TBPL1P62380 186 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 YBX1P67809 324 aaKnown RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 MRPS25P82663 173 aaKnown RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 ILF2Q12905 390 aaKnown RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 CHAF1BQ13112 559 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 CBLBQ13191 982 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 ATP1A4Q13733 1029 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 MUM1Q2TAK8 710 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 PRAMEF13Q5VWM6 474 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 ZNF425Q6IV72 752 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 ASB18Q6ZVZ8 466 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 MRGPREQ86SM8 312 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 SPNS2Q8IVW8 549 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 LRRC56Q8IYG6 542 aaPredicted RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 PYROXD1Q8WU10 500 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 RERGQ96A58 199 aaPredicted RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 PTERQ96BW5 349 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 HIST1H2AHQ96KK5 128 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 HIST1H2AJQ99878 128 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 H2AFJQ9BTM1 129 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 SLC25A23Q9BV35 468 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 RAB17Q9H0T7 212 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 NXT1Q9UKK6 140 aaKnown RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 ADAMTS6Q9UKP5 1117 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 PDE10AQ9Y233 779 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 VWA7Q9Y334 891 aa16.08■□□□□ 0.16
HMGN4-201ENST00000377575 PCDHGA9Q9Y5G4 932 aaKnown RBP16.08■□□□□ 0.16
HMGN4-201ENST00000377575 LOC105369274A0A096LPK9 316 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 LOC102723532A0A0G2JNH3 316 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 H0YGG7 62 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 PEX12O00623 359 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 ONECUT2O95948 504 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 ITGAXP20702 1163 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 CCND1P24385 295 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 HRH2P25021 359 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 CCL11P51671 97 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 PGDP52209 483 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 EMP3P54852 163 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 ARF3P61204 181 aaPredicted RBP16.07■□□□□ 0.16
HMGN4-201ENST00000377575 RELAQ04206 551 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 CKAP4Q07065 602 aaKnown RBP16.07■□□□□ 0.16
HMGN4-201ENST00000377575 KLRB1Q12918 225 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 PRMT9Q6P2P2 845 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 OVCH1Q7RTY7 1134 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 STRA8Q7Z7C7 330 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 OR4N4Q8N0Y3 316 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 CSNK1A1LQ8N752 337 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 CABS1Q96KC9 395 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 FER1L6-AS2Q96M78 137 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 TRIM54Q9BYV2 358 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 SLC26A1Q9H2B4 701 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 SLC22A11Q9NSA0 550 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 MOCS1Q9NZB8 636 aa16.07■□□□□ 0.16
HMGN4-201ENST00000377575 PCSK5Q92824 1860 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 TXNDC9O14530 226 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 CNOT3O75175 753 aaKnown RBP16.06■□□□□ 0.16
HMGN4-201ENST00000377575 TSPAN12O95859 305 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 ENO2P09104 434 aaPredicted RBP16.06■□□□□ 0.16
HMGN4-201ENST00000377575 NR1D1P20393 614 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 CASRP41180 1078 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 AP1S2P56377 157 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 CAV1Q03135 178 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 DUPD1Q68J44 220 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 FBXO42Q6P3S6 717 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 AGTRAPQ6RW13 159 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 COX15Q7KZN9 410 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 ZNF572Q7Z3I7 529 aaPredicted RBP16.06■□□□□ 0.16
HMGN4-201ENST00000377575 ZC3HC1Q86WB0 502 aaKnown RBP16.06■□□□□ 0.16
HMGN4-201ENST00000377575 METTL27Q8N6F8 245 aaPredicted RBP16.06■□□□□ 0.16
HMGN4-201ENST00000377575 CDKL2Q92772 493 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 NACC2Q96BF6 587 aa16.06■□□□□ 0.16
HMGN4-201ENST00000377575 OLFM1Q99784 485 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms