RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RBMXL3Q8N7X1 1067 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 GABPB2Q8TAK5 448 aaPredicted RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 CAPZA3Q96KX2 299 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 UTP6Q9NYH9 597 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 CTSFQ9UBX1 484 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 TRMT6Q9UJA5 497 aaKnown RBP20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 MAU2Q9Y6X3 613 aa20.72■□□□□ 0.91
CCDC28B-201ENST00000373602 MASP2O00187 686 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 SMAPO00193 183 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 KLHL41O60662 606 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 GNG11P61952 73 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 ABATP80404 500 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 RELAQ04206 551 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 MYBPC3Q14896 1274 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 MORF4L2Q15014 288 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 MUM1Q2TAK8 710 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 BBS9Q3SYG4 887 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 LRRC8EQ6NSJ5 796 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 UGT3A1Q6NUS8 523 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 JMJD6Q6NYC1 403 aaPredicted RBP20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 KIAA0408Q6ZU52 694 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 CPT1CQ8TCG5 803 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 PDLIM2Q96JY6 352 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 C10orf90Q96M02 699 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 RUNDC3BQ96NL0 473 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 NDNQ99608 321 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 SYNPO2LQ9H987 977 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 ZNF304Q9HCX3 659 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 ATP13A2Q9NQ11 1180 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 CDC23Q9UJX2 597 aa20.71■□□□□ 0.91
CCDC28B-201ENST00000373602 CLEC18AA5D8T8 446 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 SOCS6O14544 535 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 IMPA1P29218 277 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 CARSP49589 748 aaKnown RBP20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 CLEC18BQ6UXF7 455 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 GALNT7Q86SF2 657 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 KLHL7Q8IXQ5 586 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 PDIK1LQ8N165 341 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 CLEC18CQ8NCF0 446 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 COL26A1Q96A83 441 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 CERS2Q96G23 380 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 OR2A5Q96R48 311 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 SOX17Q9H6I2 414 aaPredicted RBP20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 ZNF552Q9H707 407 aaPredicted RBP20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 PLAC1Q9HBJ0 212 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 TAS2R13Q9NYV9 303 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 STOX2Q9P2F5 926 aaPredicted RBP20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 HS3ST3B1Q9Y662 390 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 SAR1BQ9Y6B6 198 aa20.7■□□□□ 0.9
CCDC28B-201ENST00000373602 HEATR5BQ9P2D3 2071 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 AHSGP02765 367 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 EZRP15311 586 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 RGS4P49798 205 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 DR1Q01658 176 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 AIMP2Q13155 320 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 RBM20Q5T481 1227 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 SLC6A19Q695T7 634 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 SHISA6Q6ZSJ9 500 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 CSNK1A1LQ8N752 337 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 EFCAB3Q8N7B9 438 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 Q8NA96 180 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 EEF1AKMT1Q8WVE0 214 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 PNPLA2Q96AD5 504 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 CABS1Q96KC9 395 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 NAPGQ99747 312 aaPredicted RBP20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 MFRPQ9BY79 579 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 SEMA3GQ9NS98 782 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 FBXL4Q9UKA2 621 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 RUVBL1Q9Y265 456 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 MAP4K5Q9Y4K4 846 aa20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 SETXQ7Z333 2677 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-201ENST00000373602 ALPPP05187 535 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 C8GP07360 202 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 ELK3P41970 407 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 OCA2Q04671 838 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 UBAP2LQ14157 1087 aaKnown RBP20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 THEMIS2Q5TEJ8 643 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 HIBCHQ6NVY1 386 aaPredicted RBP20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 PAQR3Q6TCH7 311 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 KIRREL2Q6UWL6 708 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 IGFL3Q6UXB1 125 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 STT3BQ8TCJ2 826 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 MCOLN3Q8TDD5 553 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 ANP32BQ92688 251 aaKnown RBP20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 MVB12AQ96EY5 273 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 CCDC138Q96M89 665 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 PWWP2AQ96N64 755 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 ABCF3Q9NUQ8 709 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 CUEDC1Q9NWM3 386 aaPredicted RBP20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 ZNF282Q9UDV7 671 aaPredicted RBP20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 ADAMTS6Q9UKP5 1117 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 CDC14AQ9UNH5 594 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 PDE10AQ9Y233 779 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 NUP210LQ5VU65 1888 aa20.68■□□□□ 0.9
CCDC28B-201ENST00000373602 IGLV3-12A0A075B6K2 115 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 CCDC188H7C350 402 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 SLC16A5O15375 505 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 IPO13O94829 963 aaKnown RBP20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 ZGLP1P0C6A0 271 aa20.67■□□□□ 0.9
CCDC28B-201ENST00000373602 CDKN2DP55273 166 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms