RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 LRFN1Q9P244 771 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 POLR1CO15160 346 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ZNF35P13682 527 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 HOXB9P17482 250 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 IDH3AP50213 366 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 LRIF1Q5T3J3 769 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ZNF584Q8IVC4 421 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ISOC1Q96CN7 298 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 KCNC2Q96PR1 638 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 MRPL42Q9Y6G3 142 aaKnown RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 NEDD8-MDP1E9PL57 170 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 NCBP2P52298 156 aaKnown RBP eCLIP9.08□□□□□ -0.963e-12■■□□□ 13
VPS13A-203ENST00000360280 KIAA1614Q5VZ46 1190 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 SLC8B1Q6J4K2 584 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 OR4K2Q8NGD2 314 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 PLEKHA3Q9HB20 300 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 KCNQ5Q9NR82 932 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 MT-ND2P03891 347 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 TSTQ16762 297 aaKnown RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 DPF3Q92784 378 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 CD163L1Q9NR16 1453 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 TMEM39AQ9NV64 488 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ICKQ9UPZ9 632 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ATG12O94817 140 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ERCC1P07992 297 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 CAPZA1P52907 286 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 FADDQ13158 208 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 UBXN11Q5T124 520 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 TMEM126BQ8IUX1 230 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 GID4Q8IVV7 300 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 PDZD9Q8IXQ8 264 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 CPA6Q8N4T0 437 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 CD180Q99467 661 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 MTG2Q9H4K7 406 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 MRPS30Q9NP92 439 aaKnown RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 NLGN3Q9NZ94 848 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 PCTPQ9UKL6 214 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 FBXL3Q9UKT7 428 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 HSPA7P48741 367 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 DCST2Q5T1A1 773 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 TMCO2Q7Z6W1 182 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ZNF598Q86UK7 904 aaKnown RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ERLEC1Q96DZ1 483 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 CNTN6Q9UQ52 1028 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 TRAV6A0A075B6T7 132 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 LCHNA4D1U4 455 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 CD47Q08722 323 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 HID1Q8IV36 788 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ESX1Q8N693 406 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 MRPS23Q9Y3D9 190 aaKnown RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 F5H0A9 414 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 PIAS1O75925 651 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 RCBTB2O95199 551 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 MT-CO2P00403 227 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 SLC36A4Q6YBV0 504 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 RASGEF1CQ8N431 466 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 PEX13Q92968 403 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 LRRC72A6NJI9 287 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 RPL10P27635 214 aaKnown RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 GMPSP49915 693 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-203ENST00000360280 NOMO3P69849 1222 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 TAS2R14Q9NYV8 317 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 RNF6Q9Y252 685 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 OR2AG2A6NM03 316 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 MTPNP58546 118 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 RAB4BP61018 213 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ACTC1P68032 377 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 ACTA1P68133 377 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 KRBOX4Q5JUW0 171 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 SUN3Q8TAQ9 357 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 CHPT1Q8WUD6 406 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 RETREG1Q9H6L5 497 aa9.08□□□□□ -0.96
VPS13A-203ENST00000360280 DEPDC5O75140 1603 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 COQ9O75208 318 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 RPS14P62263 151 aaKnown RBP9.07□□□□□ -0.96
VPS13A-203ENST00000360280 FMO1Q01740 532 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 MARCH9Q86YJ5 346 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 SAMD12Q8N8I0 201 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 STK35Q8TDR2 534 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 SDHAF3Q9NRP4 125 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 C1RP00736 705 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 MYCLP1P12525 358 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-203ENST00000360280 PTGER3P43115 390 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 LGI4Q8N135 537 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 HSPBAP1Q96EW2 488 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 VRK1Q99986 396 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-203ENST00000360280 ASPNQ9BXN1 380 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 GLOD4Q9HC38 313 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 NPPAP01160 153 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 RAB5CP51148 216 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 SLC26A5P58743 744 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 MRPS6P82932 125 aaKnown RBP9.07□□□□□ -0.96
VPS13A-203ENST00000360280 GRIK2Q13002 908 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 OR10G2Q8NGC3 310 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 CADM1Q9BY67 442 aaKnown RBP9.07□□□□□ -0.96
VPS13A-203ENST00000360280 SAV1Q9H4B6 383 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-203ENST00000360280 EIF2B3Q9NR50 452 aaKnown RBP9.07□□□□□ -0.96
VPS13A-203ENST00000360280 CCND3P30281 292 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-203ENST00000360280 PPP5CP53041 499 aa9.07□□□□□ -0.96
VPS13A-203ENST00000360280 SNTA1Q13424 505 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms