RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 FRG2BQ96QU4 278 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 OR2B2Q9GZK3 357 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 TPT1P8Q9HAU6 139 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 OSER1Q9NX31 292 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 GTF2IRD1Q9UHL9 959 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 BHMG1C9JSJ3 638 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 ARVCFO00192 962 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 TREHO43280 583 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 MT-ND2P03891 347 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 AMD1P17707 334 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 ST3GAL4Q11206 333 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 PAFAH1B3Q15102 231 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 IQCF2Q8IXL9 164 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 TMEM199Q8N511 208 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 OXR1Q8N573 874 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 OR10H5Q8NGA6 315 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 ZSWIM3Q96MP5 696 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 MYOCQ99972 504 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 RRAGCQ9HB90 399 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 HPF1Q9NWY4 346 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 RBM7Q9Y580 266 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 PCDHB3Q9Y5E6 796 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 RGPD5Q99666 1765 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 ARFGEF2Q9Y6D5 1785 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 ZSCAN5BA6NJL1 495 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 HAS3O00219 553 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 XKRYO14609 159 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 DFNA5O60443 496 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 GABRR2P28476 465 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 PMS2P3Q13401 168 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF181Q2M3W8 571 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 RANBP3LQ86VV4 465 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 BEX1Q9HBH7 125 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 PEX10O60683 326 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 SOX14O95416 240 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 PRKCGP05129 697 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 RFC2P35250 354 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 PLA2G16P53816 162 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 CRISP3P54108 245 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 POMZP3Q6PJE2 187 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 UGT2A3Q6UWM9 527 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 HFE2Q6ZVN8 426 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 ADGRD2Q7Z7M1 963 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 TSPEARQ8WU66 669 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 KIAA1191Q96A73 305 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 MSANTD3Q96H12 275 aa19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 RC3H2Q9HBD1 1191 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-202ENST00000356786 HMGN1P05114 100 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 CAMK1Q14012 370 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 DUOXA1Q1HG43 343 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 ATXN7L2Q5T6C5 722 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF366Q8N895 744 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 TTPALQ9BTX7 342 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 UCK2Q9BZX2 261 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 CFAP97Q9P2B7 532 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 CLCA3PQ9Y6N3 262 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 PHRF1Q9P1Y6 1649 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 SCN11AQ9UI33 1791 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 RBM47A0AV96 593 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 OR1F1O43749 312 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 PRAMEF12O95522 483 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 DBIP07108 87 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 CTSEP14091 401 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 CDK6Q00534 326 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 RPA4Q13156 261 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 C6orf136Q5SQH8 315 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 GPR142Q7Z601 462 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 IQCHQ86VS3 1027 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 ANKFN1Q8N957 763 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF675Q8TD23 568 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 ASB12Q8WXK4 309 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 ZNF558Q96NG5 402 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 DNAJC27Q9NZQ0 273 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 FBXW2Q9UKT8 454 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 KCTD3Q9Y597 815 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 LOC730098B7Z3J9 87 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 ENTPD6O75354 484 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 ARMC5Q96C12 935 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 TNFRSF10DQ9UBN6 386 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 CNOT11Q9UKZ1 510 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 PLCL2Q9UPR0 1127 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 KANTRA0A1W2PQU2 76 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 OR2B3O76000 313 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 SERPINA3P01011 423 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 MMP3P08254 477 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 SEMG2Q02383 582 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 TSC22D1Q15714 1073 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 SNX29P2Q8IUI4 249 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 BEND7Q8N7W2 519 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 CST11Q9H112 138 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 SEC14L4Q9UDX3 406 aa19.03■□□□□ 0.64
CCDC88B-202ENST00000356786 LCHNA4D1U4 455 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 NT5EP21589 574 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 DSTNP60981 165 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 PIGGQ5H8A4 983 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 CILP2Q8IUL8 1156 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 DNAJA4Q8WW22 397 aaPredicted RBP19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 BCO2Q9BYV7 579 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 OSBPL2Q9H1P3 480 aa19.02■□□□□ 0.64
CCDC88B-202ENST00000356786 SLC32A1Q9H598 525 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms