RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 YOD1Q5VVQ6 348 aaPredicted RBP17.57■□□□□ 0.4
CLN3-202ENST00000355477 ZNF425Q6IV72 752 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 COX15Q7KZN9 410 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 OVCH1Q7RTY7 1134 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 METTL27Q8N6F8 245 aaPredicted RBP17.57■□□□□ 0.4
CLN3-202ENST00000355477 TTC29Q8NA56 475 aaPredicted RBP17.57■□□□□ 0.4
CLN3-202ENST00000355477 FBXO36Q8NEA4 188 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 SPATA4Q8NEY3 305 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 ZFYVE21Q9BQ24 234 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 EPN3Q9H201 632 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 MLXIPLQ9NP71 852 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 ANAPC2Q9UJX6 822 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 PDE10AQ9Y233 779 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 PSAT1Q9Y617 370 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 ASH1LQ9NR48 2969 aaKnown RBP17.57■□□□□ 0.4
CLN3-202ENST00000355477 SCN3AQ9NY46 2000 aa17.57■□□□□ 0.4
CLN3-202ENST00000355477 CEACAM4O75871 244 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 TSPAN12O95859 305 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 CASQ1P31415 396 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 RGS4P49798 205 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 ETF1P62495 437 aaKnown RBP17.56■□□□□ 0.4
CLN3-202ENST00000355477 TLE1Q04724 770 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 C2orf54Q08AI8 447 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 FRG1Q14331 258 aaKnown RBP17.56■□□□□ 0.4
CLN3-202ENST00000355477 FAM214AQ32MH5 1076 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 HECTD2Q5U5R9 776 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 SYT10Q6XYQ8 523 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 MBOAT1Q6ZNC8 495 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 MED25Q71SY5 747 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 MRGPREQ86SM8 312 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 RAB43Q86YS6 212 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 GPATCH11Q8N954 259 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 MCOLN3Q8TDD5 553 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 PTERQ96BW5 349 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 LINGO1Q96FE5 620 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 OLFM1Q99784 485 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 ERP44Q9BS26 406 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 SLC25A23Q9BV35 468 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 CUEDC1Q9NWM3 386 aaPredicted RBP17.56■□□□□ 0.4
CLN3-202ENST00000355477 MOCS1Q9NZB8 636 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 ANKMY1Q9P2S6 941 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 VWA7Q9Y334 891 aa17.56■□□□□ 0.4
CLN3-202ENST00000355477 A6NL46 340 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 RAD51CO43502 376 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 WISP1O95388 367 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 CD63P08962 238 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 FDXRP22570 491 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 CASRP41180 1078 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 KLRB1Q12918 225 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 CBLBQ13191 982 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 NAA25Q14CX7 972 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 NKG7Q16617 165 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 PHKG1Q16816 387 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 PRTGQ2VWP7 1150 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 LRRC8EQ6NSJ5 796 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 PPP1R32Q7Z5V6 425 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 TMEM102Q8N9M5 508 aaPredicted RBP17.55■□□□□ 0.4
CLN3-202ENST00000355477 FKBP10Q96AY3 582 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 OR2A5Q96R48 311 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 DPH5Q9H2P9 285 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 PARVBQ9HBI1 364 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 PCDHGA9Q9Y5G4 932 aaKnown RBP17.55■□□□□ 0.4
CLN3-202ENST00000355477 MAU2Q9Y6X3 613 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 RELNP78509 3460 aa17.55■□□□□ 0.4
CLN3-202ENST00000355477 CNTRLQ7Z7A1 2325 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 FAM187AA6NFU0 413 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 H7BY64 318 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 MASP2O00187 686 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 CCNDBP1O95273 360 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 ALBP02768 609 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 C8GP07360 202 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 PIM1P11309 404 aaPredicted RBP17.54■□□□□ 0.4
CLN3-202ENST00000355477 IL2P60568 153 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 ABATP80404 500 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 MGAT5Q09328 741 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 ZXDCQ2QGD7 858 aaPredicted RBP17.54■□□□□ 0.4
CLN3-202ENST00000355477 HKDC1Q2TB90 917 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 THEMIS2Q5TEJ8 643 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 PLD3Q8IV08 490 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 ZBED8Q8IZ13 594 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 MYO1HQ8N1T3 1032 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 FDCSPQ8NFU4 85 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 C10orf90Q96M02 699 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 CCDC138Q96M89 665 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 PRAP1Q96NZ9 151 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 SPSB2Q99619 263 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 NUDT9Q9BW91 350 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 SLC26A1Q9H2B4 701 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 CTSFQ9UBX1 484 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 SH2B3Q9UQQ2 575 aa17.54■□□□□ 0.4
CLN3-202ENST00000355477 RUVBL1Q9Y265 456 aaKnown RBP17.54■□□□□ 0.4
CLN3-202ENST00000355477 HAT1O14929 419 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 SLC16A5O15375 505 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 PIAS1O75925 651 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 PGDP52209 483 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 TBPL1P62380 186 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 RELAQ04206 551 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 PDAP1Q13442 181 aaKnown RBP17.53■□□□□ 0.4
CLN3-202ENST00000355477 DUPD1Q68J44 220 aa17.53■□□□□ 0.4
CLN3-202ENST00000355477 FAM45BPQ6NSW5 357 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms