RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 TRPV3Q8NET8 790 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 GIPC3Q8TF64 312 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 LRRC58Q96CX6 371 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 KLF16Q9BXK1 252 aaPredicted RBP14.49□□□□□ -0.09
COL17A1-201ENST00000353479 GNB5O14775 395 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 CSTF2P33240 577 aaKnown RBP eCLIP14.49□□□□□ -0.09
COL17A1-201ENST00000353479 TTKP33981 857 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 ARHGAP40Q5TG30 622 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 TMEM135Q86UB9 458 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 SLC39A3Q9BRY0 314 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 TAPBPLQ9BX59 468 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 RACGAP1Q9H0H5 632 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 CCNB1IP1Q9NPC3 277 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 ALKBH4Q9NXW9 302 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 TMED5Q9Y3A6 229 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 A0A1B0GUL6 1792 aa14.49□□□□□ -0.09
COL17A1-201ENST00000353479 DUXAA6NLW8 204 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 C5AR1P21730 350 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 SLC6A4P31645 630 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 SHMT2P34897 504 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 RPS9P46781 194 aaKnown RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 KCNC3Q14003 757 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 C6orf52Q5T4I8 152 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 EPGNQ6UW88 154 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 OXR1Q8N573 874 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 REXO4Q9GZR2 422 aaKnown RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 SPATA7Q9P0W8 599 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 REM1O75628 298 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 ALDOAP04075 364 aaKnown RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 C8orf89P0DMQ9 161 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 HMGCLP35914 325 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 NR1H2P55055 460 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 C16orf72Q14CZ0 275 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 CEP97Q8IW35 865 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 FAM3CQ92520 227 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 H0YGN5 161 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 GADD45GO95257 159 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 DBTP11182 482 aaKnown RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 BPIP17213 487 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 PFKLP17858 780 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 IZUMO1Q8IYV9 350 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 OR9I1Q8NGQ6 314 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 SLC46A2Q9BY10 475 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 SMPD3Q9NY59 655 aaPredicted RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 NFS1Q9Y697 457 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 CD68P34810 354 aaPredicted RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 DSTNP60981 165 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 HERC3Q15034 1050 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 KHDC1Q4VXA5 237 aaKnown RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 TMEM214Q6NUQ4 689 aaKnown RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 FCRL4Q96PJ5 515 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 CHID1Q9BWS9 393 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 ELL3Q9HB65 397 aaPredicted RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 PAPOLBQ9NRJ5 636 aaKnown RBP14.48□□□□□ -0.09
COL17A1-201ENST00000353479 PNMA8CA0A1B0GUJ8 204 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 LAMTOR5O43504 91 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 VEGFDO43915 354 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 ADRB3P13945 408 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 ATF6P18850 670 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 CDKN2DP55273 166 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 GPR68Q15743 365 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 FAM26DQ5JW98 314 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 KLHDC10Q6PID8 442 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 PIGKQ92643 395 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 CGREF1Q99674 301 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 IL21RQ9HBE5 538 aa14.48□□□□□ -0.09
COL17A1-201ENST00000353479 GIMD1P0DJR0 217 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 SPINT3P49223 89 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 TSACCQ96A04 125 aaPredicted RBP14.47□□□□□ -0.09
COL17A1-201ENST00000353479 ARMC5Q96C12 935 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 COL21A1Q96P44 957 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 TRIM39Q9HCM9 518 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 CSNK1G1Q9HCP0 422 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 MOCS1Q9NZB8 636 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 ZNF624Q9P2J8 865 aaPredicted RBP14.47□□□□□ -0.09
COL17A1-201ENST00000353479 OR1A2Q9Y585 309 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 PRORSD1PA6NEY8 169 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 BHMG1C9JSJ3 638 aaPredicted RBP14.47□□□□□ -0.09
COL17A1-201ENST00000353479 FADS2O95864 444 aaKnown RBP14.47□□□□□ -0.09
COL17A1-201ENST00000353479 GANABQ14697 944 aaKnown RBP14.47□□□□□ -0.09
COL17A1-201ENST00000353479 EIPR1Q53HC9 387 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 CRTC1Q6UUV9 634 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 FGF13Q92913 245 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 C8orf4Q9NR00 106 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 HIDE1A8MVS5 230 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 NRG3P56975 720 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 DNAJB13P59910 316 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 ATP1A4Q13733 1029 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 DUOXA1Q1HG43 343 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 FAM92BQ6ZTR7 304 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 UXS1Q8NBZ7 420 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 NSUN5Q96P11 429 aaKnown RBP14.47□□□□□ -0.09
COL17A1-201ENST00000353479 C17orf62Q9BQA9 187 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 SPRTNQ9H040 489 aaPredicted RBP14.47□□□□□ -0.09
COL17A1-201ENST00000353479 GDE1Q9NZC3 331 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 DAPK2Q9UIK4 370 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 USP54Q70EL1 1684 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 RIIAD1A6NNX1 92 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 PRSS56P0CW18 603 aa14.47□□□□□ -0.09
COL17A1-201ENST00000353479 CLCN7P51798 805 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms