RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 NXPE4Q6UWF7 544 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SETD7Q8WTS6 366 aaKnown RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SH3KBP1Q96B97 665 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 REPS1Q96D71 796 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 WDR34Q96EX3 536 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 TSSK3Q96PN8 268 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 HHIPQ96QV1 700 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 HAUS8Q9BT25 410 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 MENTQ9BUN1 341 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 EBPLQ9BY08 206 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 EHD1Q9H4M9 534 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 BRF2Q9HAW0 419 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 PRDM8Q9NQV8 689 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 GEMIN8Q9NWZ8 242 aaKnown RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SPATA7Q9P0W8 599 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 STX18Q9P2W9 335 aaKnown RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 SUCOQ9UBS9 1254 aaKnown RBP12.93□□□□□ -0.34
HMGB1-202ENST00000339872 TAC3Q9UHF0 121 aa12.93□□□□□ -0.34
HMGB1-202ENST00000339872 ZNF839A8K0R7 811 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 NME4O00746 187 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 MAP3K7O43318 606 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 HSD3B1P14060 373 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 SDC1P18827 310 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 TACR1P25103 407 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 HSD3B2P26439 372 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 HSD17B2P37059 387 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 FOXM1Q08050 763 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 CYP2A13Q16696 494 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 UAP1L1Q3KQV9 507 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 ZNF687Q8N1G0 1237 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 RAB42Q8N4Z0 105 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 GLB1L3Q8NCI6 653 aaPredicted RBP12.92□□□□□ -0.34
HMGB1-202ENST00000339872 TSTD1Q8NFU3 115 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 DNAJB14Q8TBM8 379 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 TSACCQ96A04 125 aaPredicted RBP12.92□□□□□ -0.34
HMGB1-202ENST00000339872 ASB9Q96DX5 294 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 TOE1Q96GM8 510 aaKnown RBP12.92□□□□□ -0.34
HMGB1-202ENST00000339872 TACO1Q9BSH4 297 aaKnown RBP12.92□□□□□ -0.34
HMGB1-202ENST00000339872 TRIM8Q9BZR9 551 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 SPNS1Q9H2V7 528 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 CLMPQ9H6B4 373 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 SLAMF8Q9P0V8 285 aa12.92□□□□□ -0.34
HMGB1-202ENST00000339872 CHURC1-FNTBB4DL54 471 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 ETHE1O95571 254 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 APBB3O95704 486 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 IGLV3-19P01714 112 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 SLC6A2P23975 617 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 RPS13P62277 151 aaKnown RBP12.91□□□□□ -0.34
HMGB1-202ENST00000339872 YBX1P67809 324 aaKnown RBP12.91□□□□□ -0.34
HMGB1-202ENST00000339872 PRKCQQ04759 706 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 SLC34A1Q06495 639 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 HIST2H2ACQ16777 129 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-202ENST00000339872 SPANXN4Q5MJ08 99 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 HIST2H2AA3Q6FI13 130 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 NOXRED1Q6NXP6 359 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 DHDDSQ86SQ9 333 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 BHLHE22Q8NFJ8 381 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-202ENST00000339872 SLC13A3Q8WWT9 602 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 GUCD1Q96NT3 240 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 CAMK1GQ96NX5 476 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 S100A14Q9HCY8 104 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 STOML1Q9UBI4 398 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 ABCD2Q9UBJ2 740 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 CD300AQ9UGN4 299 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 LRP4O75096 1905 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 BCAS2O75934 225 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-202ENST00000339872 IGHV4-34P06331 123 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 ANPEPP15144 967 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 PSMB5P28074 263 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 PTDSS1P48651 473 aaKnown RBP12.91□□□□□ -0.34
HMGB1-202ENST00000339872 CLDN8P56748 225 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 PLIN5Q00G26 463 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 ACSM2AQ08AH3 577 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 LAPTM5Q13571 262 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 GAS6Q14393 721 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 ACSM2BQ68CK6 577 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 AAGABQ6PD74 315 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 C17orf64Q86WR6 236 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 SLC15A3Q8IY34 581 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 FAM9CQ8IZT9 166 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 SYNPOQ8N3V7 929 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 SMPDL3AQ92484 453 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 TPSD1Q9BZJ3 242 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 PCDHAC1Q9H158 963 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 BCAP29Q9UHQ4 241 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 FBXL21Q9UKT6 434 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 ANGPTL2Q9UKU9 493 aa12.91□□□□□ -0.34
HMGB1-202ENST00000339872 KRBA1A5PL33 1030 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 ACOT8O14734 319 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 LRATO95237 230 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 BAG2O95816 211 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 ACPPP15309 386 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 AK4P27144 223 aaPredicted RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 TRIM25Q14258 630 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 SF1Q15637 639 aaKnown RBP12.9□□□□□ -0.34
HMGB1-202ENST00000339872 KIAA0895LQ68EN5 471 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 SYT12Q8IV01 421 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 LAS2Q8IYD9 372 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 DPP10Q8N608 796 aa12.9□□□□□ -0.34
HMGB1-202ENST00000339872 LINC01555Q8NAE3 123 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms