RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 A0A1W2PRB8 838 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 LOC730098B7Z3J9 87 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 NRP2O60462 931 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 RAB28P51157 221 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 MTTPP55157 894 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 P4HA3Q7Z4N8 544 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 SETD9Q8NE22 299 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 PHF10Q8WUB8 498 aaKnown RBP9.85□□□□□ -0.83
USP54-201ENST00000339859 SLC47A1Q96FL8 570 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 FCRL3Q96P31 734 aaPredicted RBP9.85□□□□□ -0.83
USP54-201ENST00000339859 CDK15Q96Q40 435 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 SYT11Q9BT88 431 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 LGR4Q9BXB1 951 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 C1QTNF1Q9BXJ1 281 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 ALKBH4Q9NXW9 302 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 A0A0G2JN53 185 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 A0A0J9YY10 115 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 TLR4O00206 839 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 BMP7P18075 431 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 SCTRP47872 440 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 GPX6P59796 221 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 RPS13P62277 151 aaKnown RBP9.85□□□□□ -0.83
USP54-201ENST00000339859 SLC5A9Q2M3M2 681 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 GPR150Q8NGU9 434 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 SLC38A2Q96QD8 506 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 KCNS3Q9BQ31 491 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 TBL1XR1Q9BZK7 514 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 GAREM1Q9H706 876 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 NEK6Q9HC98 313 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 KCNC1P48547 511 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 CASP6P55212 293 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 ERVK-8P63133 956 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 MSS51Q4VC12 460 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 OR2L2Q8NH16 312 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 KCNC2Q96PR1 638 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 C9orf16Q9BUW7 83 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 FADS3Q9Y5Q0 445 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 PRORSD1PA6NEY8 169 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 GMFGO60234 142 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 ZDHHC11BP0C7U3 371 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 ZNF37AP17032 561 aaPredicted RBP9.85□□□□□ -0.83
USP54-201ENST00000339859 FDXRP22570 491 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 BMP8BP34820 402 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 TBPL1P62380 186 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 METTL21CQ5VZV1 264 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 FIGLAQ6QHK4 219 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 RELL1Q8IUW5 271 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 OR4F6Q8NGB9 312 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 SP7Q8TDD2 431 aaPredicted RBP9.85□□□□□ -0.83
USP54-201ENST00000339859 PRDM8Q9NQV8 689 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 KLF15Q9UIH9 416 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 IGLV3-10A0A075B6K4 115 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 ARHGEF33A8MVX0 844 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 H7BY64 318 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 CAPN5O15484 640 aaPredicted RBP9.85□□□□□ -0.83
USP54-201ENST00000339859 CNR2P34972 360 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 VHLP40337 213 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 E2F1Q01094 437 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 DECR1Q16698 335 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 CYP2R1Q6VVX0 501 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 ZBTB49Q6ZSB9 765 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 C1orf52Q8N6N3 182 aaKnown RBP9.85□□□□□ -0.83
USP54-201ENST00000339859 PMEPA1Q969W9 287 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 MOAP1Q96BY2 351 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 THAP11Q96EK4 314 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 PRAP1Q96NZ9 151 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 ZDHHC5Q9C0B5 715 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 Q9N2J8 555 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 RPRD1BQ9NQG5 326 aaKnown RBP9.85□□□□□ -0.83
USP54-201ENST00000339859 LOC285556D6RIA3 1793 aa9.85□□□□□ -0.83
USP54-201ENST00000339859 LDB2O43679 373 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 PENKP01210 267 aaPredicted RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 ALPPP05187 535 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 SDHBP21912 280 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 PRDX6P30041 224 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 DNAJB13P59910 316 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 RCN1Q15293 331 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.84□□□□□ -0.83
USP54-201ENST00000339859 TMEM35AQ53FP2 167 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 STEAP4Q687X5 459 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 NEK10Q6ZWH5 1172 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 Q7L0L9 218 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 CADM2Q8N3J6 435 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 OR56A1Q8NGH5 318 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 CMKLR1Q99788 373 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 LDAHQ9H6V9 325 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 PLCL2Q9UPR0 1127 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 FOCADQ5VW36 1801 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 C1SP09871 688 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 PIK3CBP42338 1070 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 RANBP1P43487 201 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 SERPINB10P48595 397 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 NCF4Q15080 339 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 TMEM31Q5JXX7 168 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 WASHC2DQ5SRD0 308 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 TTC33Q6PID6 262 aaPredicted RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 GK5Q6ZS86 529 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ALYREFQ86V81 257 aaKnown RBP9.84□□□□□ -0.83
USP54-201ENST00000339859 TP53INP2Q8IXH6 220 aa9.84□□□□□ -0.83
USP54-201ENST00000339859 ZNF781Q8N8C0 355 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms