RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 MCMBPQ9BTE3 642 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM245Q9H330 911 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 ALG2Q9H553 416 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM184CQ9NVA4 438 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 SERTAD3Q9UJW9 196 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 MMP17Q9ULZ9 603 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 LIPT1Q9Y234 373 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 SCN4AP35499 1836 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 IGLON5A6NGN9 336 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 MROH6A6NGR9 719 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 AP1G1O43747 822 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 RSL1D1O76021 490 aaKnown RBP6.67□□□□□ -1.34
SF3B1-201ENST00000335508 TNFAIP8O95379 198 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 SLC16A8O95907 504 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 SRFP11831 508 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 MYCLP1P12525 358 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-201ENST00000335508 ANXA8P13928 327 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 GSTM5P46439 218 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 RGS8P57771 180 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-201ENST00000335508 KCNJ2P63252 427 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 BIKQ13323 160 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 PTPRCAPQ14761 206 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 CTC1Q2NKJ3 1217 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 LINC00471Q8N535 108 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 PDPRQ8NCN5 879 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 FUBP1Q96AE4 644 aaKnown RBP6.67□□□□□ -1.34
SF3B1-201ENST00000335508 BTBD9Q96Q07 612 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 C1QTNF2Q9BXJ5 285 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 AKTIPQ9H8T0 292 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 CLK4Q9HAZ1 481 aaKnown RBP6.67□□□□□ -1.34
SF3B1-201ENST00000335508 IFT80Q9P2H3 777 aaPredicted RBP6.67□□□□□ -1.34
SF3B1-201ENST00000335508 OARD1Q9Y530 152 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 ST14Q9Y5Y6 855 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 V9GYQ6 96 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 COL4A1P02462 1669 aa6.67□□□□□ -1.34
SF3B1-201ENST00000335508 TRBV23OR9-2A0A075B6M9 112 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 C2orf74A8MZ97 194 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 RNH1P13489 461 aaKnown RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TIMP2P16035 220 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 AVPR1BP47901 424 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TMED10P49755 219 aaKnown RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 CDC42P60953 191 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 ELF3P78545 371 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 ALG11Q2TAA5 492 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 EML3Q32P44 896 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 EPGNQ6UW88 154 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 CYP4V2Q6ZWL3 525 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 IKBIPQ70UQ0 350 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 PEX5LQ8IYB4 626 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 BCL7CQ8WUZ0 217 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 FKBP10Q96AY3 582 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 PDE7BQ9NP56 450 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 SDR39U1Q9NRG7 319 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 SLC7A8Q9UHI5 535 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 CDV3Q9UKY7 258 aaKnown RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 SAMHD1Q9Y3Z3 626 aaKnown RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 DGKBQ9Y6T7 804 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 MYO10Q9HD67 2058 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 NRXN2Q9P2S2 1712 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 OR6A2O95222 327 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 FAM58BPP0C7Q3 252 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 F3P13726 295 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 ALOX12P18054 663 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TEAD1P28347 426 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 IDH3AP50213 366 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 INHBCP55103 352 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 DOC2AQ14183 400 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 GRM7Q14831 915 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 AFMIDQ63HM1 303 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TSPAN33Q86UF1 283 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 PARGQ86W56 976 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 PLXDC1Q8IUK5 500 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 SVOPQ8N4V2 548 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 ASB12Q8WXK4 309 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 L3HYPDHQ96EM0 354 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 CENPNQ96H22 339 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 MTG2Q9H4K7 406 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 ADAP2Q9NPF8 381 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 POMPQ9Y244 141 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TNS1Q9HBL0 1735 aaKnown RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 CAPN5O15484 640 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 FZD6O60353 706 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 STX11O75558 287 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 DRD2P14416 443 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 RPL6Q02878 288 aaKnown RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 LRRC74BQ6ZQY2 392 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 TRIM74Q86UV6 250 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 PLD6Q8N2A8 252 aaKnown RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 CYGBQ8WWM9 190 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 NSMCE3Q96MG7 304 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 Q96MT0 163 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 HDAC8Q9BY41 377 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 DLGAP4Q9Y2H0 992 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 C15orf41Q9Y2V0 281 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 DNAJC15Q9Y5T4 150 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 NUMBLQ9Y6R0 609 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 RGPD3A6NKT7 1758 aaPredicted RBP6.66□□□□□ -1.34
SF3B1-201ENST00000335508 RGPD4Q7Z3J3 1758 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 NUP205Q92621 2012 aa6.66□□□□□ -1.34
SF3B1-201ENST00000335508 FAM221BA6H8Z2 402 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms