RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 RNF44Q7L0R7 432 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 OR4N4Q8N0Y3 316 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 FBF1Q8TES7 1133 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 ANKRD49Q8WVL7 239 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 CDKL2Q92772 493 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 GBP5Q96PP8 586 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 RBBP8Q99708 897 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 CPNE1Q99829 537 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 PLCD4Q9BRC7 762 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 STARD5Q9NSY2 213 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 ABCF3Q9NUQ8 709 aa15.16■□□□□ 0.02
CLN3-201ENST00000333496 FARSAQ9Y285 508 aaKnown RBP15.16■□□□□ 0.02
CLN3-201ENST00000333496 PCSK5Q92824 1860 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 TBPL1P62380 186 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 NFKB2Q00653 900 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 UBAP2Q5T6F2 1119 aaKnown RBP15.15■□□□□ 0.02
CLN3-201ENST00000333496 C1orf189Q5VU69 101 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 AGTRAPQ6RW13 159 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 ZNF771Q7L3S4 317 aaPredicted RBP15.15■□□□□ 0.02
CLN3-201ENST00000333496 PAQR7Q86WK9 346 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 ENDOVQ8N8Q3 282 aaKnown RBP15.15■□□□□ 0.02
CLN3-201ENST00000333496 DPH2Q9BQC3 489 aaPredicted RBP15.15■□□□□ 0.02
CLN3-201ENST00000333496 SELENOSQ9BQE4 189 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 NLNQ9BYT8 704 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 ATG10Q9H0Y0 220 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 CAB39LQ9H9S4 337 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 CUEDC1Q9NWM3 386 aaPredicted RBP15.15■□□□□ 0.02
CLN3-201ENST00000333496 IRAK4Q9NWZ3 460 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 SRPK3Q9UPE1 567 aa15.15■□□□□ 0.02
CLN3-201ENST00000333496 FITM1A5D6W6 292 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 SRPX2O60687 465 aaPredicted RBP15.14■□□□□ 0.01
CLN3-201ENST00000333496 FAM155BO75949 473 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 C1QL1O75973 258 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 RECKO95980 971 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 RAB40ALP0C0E4 278 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 ECHS1P30084 290 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 GP5P40197 560 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 VSX2P58304 361 aaPredicted RBP15.14■□□□□ 0.01
CLN3-201ENST00000333496 RPS15P62841 145 aaKnown RBP15.14■□□□□ 0.01
CLN3-201ENST00000333496 POU4F1Q01851 419 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 EFTUD2Q15029 972 aaKnown RBP eCLIP15.14■□□□□ 0.013e-6■■■■□ 22
CLN3-201ENST00000333496 PPP1R3AQ16821 1122 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 BORAQ6PGQ7 559 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 PROKR1Q8TCW9 393 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 CATSPER2Q96P56 530 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 GPR22Q99680 433 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 ZFYVE21Q9BQ24 234 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 POPDC3Q9HBV1 291 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 ANKMY1Q9P2S6 941 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 SH2B3Q9UQQ2 575 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 COL6A6A6NMZ7 2263 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 CDC7O00311 574 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 MED26O95402 600 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 HIST1H2AGP0C0S8 130 aaPredicted RBP15.14■□□□□ 0.01
CLN3-201ENST00000333496 FAM87AP0C7U9 286 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 HIST1H2ADP20671 130 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 ITGAXP20702 1163 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 ABATP80404 500 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 NAE1Q13564 534 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 IL10RAQ13651 578 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 NAA25Q14CX7 972 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 DEFB109BQ30KR1 87 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 TCTE1Q5JU00 501 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 WASHC2DQ5SRD0 308 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 THEMIS2Q5TEJ8 643 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 TTLL10Q6ZVT0 673 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 SYVN1Q86TM6 617 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 CTAGE3PQ8IX95 158 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 DTWD1Q8N5C7 304 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 NKAPQ8N5F7 415 aaKnown RBP15.14■□□□□ 0.01
CLN3-201ENST00000333496 PPM1NQ8N819 430 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 HIST1H2AHQ96KK5 128 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 HIST1H2AJQ99878 128 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 H2AFJQ9BTM1 129 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 NDC1Q9BTX1 674 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 SGPP1Q9BX95 441 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 FUT8Q9BYC5 575 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 GPAMQ9HCL2 828 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 CCDC177Q9NQR7 707 aaPredicted RBP15.14■□□□□ 0.01
CLN3-201ENST00000333496 TXLNGQ9NUQ3 528 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 ARL15Q9NXU5 204 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 TXNDC16Q9P2K2 825 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 TCFL5Q9UL49 500 aa15.14■□□□□ 0.01
CLN3-201ENST00000333496 SCN3AQ9NY46 2000 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 CCNDBP1O95273 360 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 AGXTP21549 392 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 STX2P32856 288 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 AP1S2P56377 157 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 DCDP81605 110 aaKnown RBP15.13■□□□□ 0.01
CLN3-201ENST00000333496 NCF4Q15080 339 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 PRAMEF13Q5VWM6 474 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 WDR93Q6P2C0 686 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 RELL1Q8IUW5 271 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 MED8Q96G25 268 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 OR2A5Q96R48 311 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 ARHGAP9Q9BRR9 750 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 FAM129AQ9BZQ8 928 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 FAM117AQ9C073 453 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 SLC22A11Q9NSA0 550 aa15.13■□□□□ 0.01
CLN3-201ENST00000333496 CUTCQ9NTM9 273 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms