RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C2orf92A0A1B0GVN3 265 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 OR5AL1P0C617 328 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CCNB1P14635 433 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CCND3P30281 292 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PTGER2P43116 358 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ACSM2AQ08AH3 577 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 DBPQ10586 325 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CRMP1Q14194 572 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 GRIK4Q16099 956 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 MAPKAPK3Q16644 382 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 INAVAQ3KP66 663 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TEX30Q5JUR7 227 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 FIP1L1Q6UN15 594 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 P2RY8Q86VZ1 359 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC7A5P1Q8MH63 180 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TMEM80Q96HE8 168 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PHOX2BQ99453 314 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 NT5C1AQ9BXI3 368 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 NDST4Q9H3R1 872 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PTGES2Q9H7Z7 377 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 RXFP1Q9HBX9 757 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 EMILIN3Q9NT22 766 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TAS2R10Q9NYW0 307 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CD207Q9UJ71 328 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 DKKL1Q9UK85 242 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 HCN2Q9UL51 889 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC22A20A6NK97 555 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PPP5D1E7EU14 171 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PDE8AO60658 829 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CDK14O94921 469 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TSPAN8P19075 237 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CDC25AP30304 524 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PTDSS1P48651 473 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TIMM10P62072 90 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 CTBP1Q13363 440 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 POU4F3Q15319 338 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 BOLA3Q53S33 107 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 YIF1BQ5BJH7 314 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 STXBP5Q5T5C0 1151 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TMEM268Q5VZI3 342 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 KCTD1Q719H9 257 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 LAPTM4BQ86VI4 370 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 FJX1Q86VR8 437 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ADGRF3Q8IZF5 1079 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 OR1S1Q8NH92 325 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 PPP1R35Q8TAP8 253 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 GAD1Q99259 594 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ANKRA2Q9H9E1 313 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 SPACA1Q9HBV2 294 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 ASB4Q9Y574 426 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 AK9Q5TCS8 1911 aa7.47□□□□□ -1.21
LIMCH1-201ENST00000313860 TRAV34A0A0B4J273 112 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 LOC102724428A0A0B4J2F2 783 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 GLSO94925 669 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 SNAPINO95295 136 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 MATN4O95460 622 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 HLA-EP13747 358 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF823P16415 610 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 IDUAP35475 653 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 SIK1P57059 783 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 ADAM15Q13444 863 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 SIM2Q14190 667 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 NAB2Q15742 525 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 EFCAB12Q6NXP0 572 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 GLT6D1Q7Z4J2 308 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 OR52H1Q8NGJ2 320 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 PAQR8Q8TEZ7 354 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 C1orf21Q9H246 121 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 OR51V1Q9H2C8 321 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 AP5S1Q9NUS5 200 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 IMP3Q9NV31 184 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF701Q9NV72 531 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 DNAJC28Q9NX36 388 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 SPIN1Q9Y657 262 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 LRATO95237 230 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 NAT1P18440 290 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 XRCC1P18887 633 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 TIE1P35590 1138 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 KCNJ5P48544 419 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 DIO1P49895 249 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 RAB33AQ14088 237 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM187BQ17R55 369 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 IGSF11Q5DX21 431 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 CEP68Q76N32 757 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 METTL3Q86U44 580 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 DCAKDQ8WVC6 231 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 UFD1Q92890 307 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 PCDHB18PQ96TA0 734 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 LRRC3Q9BY71 257 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 GDF3Q9NR23 364 aa7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 MRPL11Q9Y3B7 192 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-201ENST00000313860 ABCC12Q96J65 1359 aa7.46□□□□□ -1.22
LIMCH1-201ENST00000313860 NPHP3-ACAD11A0A0J9YXS1 232 aa7.46□□□□□ -1.22
LIMCH1-201ENST00000313860 NDUFS8O00217 210 aa7.46□□□□□ -1.22
LIMCH1-201ENST00000313860 EIF1AYO14602 144 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-201ENST00000313860 ADH1AP07327 375 aa7.46□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF286BP0CG31 522 aa7.46□□□□□ -1.22
LIMCH1-201ENST00000313860 STAG3L2P0CL84 134 aa7.46□□□□□ -1.22
LIMCH1-201ENST00000313860 OR12D1P0DN82 309 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms