RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PCDH7O60245 1069 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 RASGRP1O95267 797 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 PCCBP05166 539 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 ADCYAP1R1P41586 468 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF460Q14592 562 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 TGFBIQ15582 683 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 UGT8Q16880 541 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 COL28A1Q2UY09 1125 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 BAIAP2L2Q6UXY1 529 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 ZSCAN1Q8NBB4 408 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 TMEM145Q8NBT3 493 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 NETO2Q8NC67 525 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 MAELQ96JY0 434 aaKnown RBP13.54□□□□□ -0.24
CSPG4-201ENST00000308508 OXSMQ9NWU1 459 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 FBXL3Q9UKT7 428 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 HES2Q9Y543 173 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 J3QLW9 94 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 SLC7A4O43246 635 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 DNAJB5O75953 348 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 IFNA1P01562 189 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 IL3P08700 152 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF19P17023 458 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 RORAP35398 523 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 SLC18A1P54219 525 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 AQP11Q8NBQ7 271 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 FAM46DQ8NEK8 389 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 JSRP1Q96MG2 331 aaPredicted RBP13.54□□□□□ -0.24
CSPG4-201ENST00000308508 TM9SF2Q99805 663 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 BTBD1Q9H0C5 482 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 OR10A4Q9H209 315 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 PIGBOS1A0A0B4J2F0 54 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 E7EQ34 232 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 PTPRAP18433 802 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 CHMP24386 653 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 FBXO48Q5FWF7 155 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 OTUB2Q96DC9 234 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 UNKLQ9H9P5 680 aaKnown RBP13.54□□□□□ -0.24
CSPG4-201ENST00000308508 OR2AG2A6NM03 316 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 K7EPI3 171 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 B4GALT4O60513 344 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 OAZ2O95190 189 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 PDYNP01213 254 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 IMPDH1P20839 514 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 ADH6P28332 368 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 TARBP2Q15633 366 aaKnown RBP13.54□□□□□ -0.24
CSPG4-201ENST00000308508 ANKRD22Q5VYY1 191 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 NR4A3Q92570 626 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 PCDH10Q9P2E7 1040 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 MYH7BA7E2Y1 1941 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 A0A1W2PRB8 838 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 AGPSO00116 658 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 RGL2O15211 777 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 FFAR2O15552 330 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 NPPAP01160 153 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 MT-ND5P03915 603 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 AGTR1P30556 359 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 NBPF12Q5TAG4 269 aaPredicted RBP13.54□□□□□ -0.24
CSPG4-201ENST00000308508 TTYH2Q9BSA4 534 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 FBP2O00757 339 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 MSI1O43347 362 aaKnown RBP13.54□□□□□ -0.24
CSPG4-201ENST00000308508 PI15O43692 258 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 HSD17B2P37059 387 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 TATDN1Q6P1N9 297 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 VSIG10LQ86VR7 867 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 UBQLNLQ8IYU4 475 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 TOR1AIP2Q8NFQ8 470 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 KREMEN1Q96MU8 473 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 EBF4Q9BQW3 602 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 ABCG4Q9H172 646 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 GBA2Q9HCG7 927 aaPredicted RBP13.54□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF358Q9NW07 568 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 CNTNAP1P78357 1384 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 HCKP08631 526 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 CRYBB1P53674 252 aaPredicted RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 IL17AQ16552 155 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 MTFR2Q6P444 385 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 SLC36A4Q6YBV0 504 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 LRRC57Q8N9N7 239 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 PBDC1Q9BVG4 233 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 TLR6Q9Y2C9 796 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 INMT-MINDY4F8WBC2 141 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 BMP8BP34820 402 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 PTGIRP43119 386 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 BMP8AQ7Z5Y6 402 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 VTCN1Q7Z7D3 282 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 SLC51AQ86UW1 340 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 MFSD2AQ8NA29 543 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 MTERF1Q99551 399 aaKnown RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 FAM83DQ9H4H8 585 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 TCRBV7S2A1N4TA0A589 114 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 OR2B3O76000 313 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 PRNPP04156 253 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 DSC2Q02487 901 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 ENPP2Q13822 863 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 CD180Q99467 661 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 TIMM8BQ9Y5J9 83 aaPredicted RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 TVP23AA6NH52 213 aa13.53□□□□□ -0.24
CSPG4-201ENST00000308508 BHMG1C9JSJ3 638 aaPredicted RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 RPP14O95059 124 aaKnown RBP13.53□□□□□ -0.24
CSPG4-201ENST00000308508 ENGP17813 658 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms