RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CCDC28AQ8IWP9 274 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 FAM46DQ8NEK8 389 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 OR10H5Q8NGA6 315 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 ZNF675Q8TD23 568 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 C15orf40Q8WUR7 153 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 SMG7Q92540 1137 aaKnown RBP12.52□□□□□ -0.4
COL3A1-201ENST00000304636 ZDHHC7Q9NXF8 308 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 ABCG2Q9UNQ0 655 aa12.52□□□□□ -0.4
COL3A1-201ENST00000304636 DIRAS1O95057 198 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 BMP2P12643 396 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 LEPRP48357 1165 aaKnown RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 CASP9P55211 416 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 TCEAL5Q5H9L2 206 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 C6orf136Q5SQH8 315 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 VARS2Q5ST30 1063 aaKnown RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 MBOAT1Q6ZNC8 495 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 CNIH3Q8TBE1 160 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 CMTM7Q96FZ5 175 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 BARD1Q99728 777 aaKnown RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 TRIM2Q9C040 744 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 P2RX2Q9UBL9 471 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 HS3ST4Q9Y661 456 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 COL1A1P02452 1464 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 EEDO75530 441 aaKnown RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 FGF19O95750 216 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 GLUD1P00367 558 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 SMPD1P17405 629 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 CPN2P22792 545 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 ARCN1P48444 511 aaKnown RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 ARHGDIBP52566 201 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 GBX2P52951 348 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 RPS3AP61247 264 aaKnown RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 NFATC3Q12968 1075 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 GRIK2Q13002 908 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 FBXL22Q6P050 247 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 SAMD14Q8IZD0 417 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 SPACA7Q96KW9 195 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 ZNF382Q96SR6 550 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 CDADC1Q9BWV3 514 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 SMOC2Q9H3U7 446 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 MINDY3Q9H8M7 445 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 RC3H2Q9HBD1 1191 aaKnown RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 PHPT1Q9NRX4 125 aaPredicted RBP12.52□□□□□ -0.41
COL3A1-201ENST00000304636 TBC1D14Q9P2M4 693 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 HCN4Q9Y3Q4 1203 aa12.52□□□□□ -0.41
COL3A1-201ENST00000304636 ZNF701M0R085 212 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ADH1CP00326 375 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 S100GP29377 79 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 DNASE1L1P49184 302 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 NDUFA9Q16795 377 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ZNF630Q2M218 657 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-201ENST00000304636 C1orf220Q5T0J3 134 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 OR52E8Q6IFG1 317 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 DEFB132Q7Z7B7 95 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 CEP76Q8TAP6 659 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 LGALS12Q96DT0 336 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 PKP4Q99569 1192 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ANKRD60Q9BZ19 345 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 SOX17Q9H6I2 414 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-201ENST00000304636 POLE4Q9NR33 117 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 TNFRSF10DQ9UBN6 386 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ERVK-11Q9UQG0 969 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 MRPS23Q9Y3D9 190 aaKnown RBP12.51□□□□□ -0.41
COL3A1-201ENST00000304636 TTC24A2A3L6 582 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-201ENST00000304636 PRODHO43272 600 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 SLC35E2BP0CK96 405 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 NT5EP21589 574 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 MLLT6P55198 1093 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ZNF155Q12901 538 aaPredicted RBP12.51□□□□□ -0.41
COL3A1-201ENST00000304636 COQ5Q5HYK3 327 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 SLC30A6Q6NXT4 461 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 OR10G6Q8NH81 332 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 PYCR2Q96C36 320 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ALPK1Q96QP1 1244 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 SLC38A8A6NNN8 435 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 PPEF2O14830 753 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 PRNPP04156 253 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ACADLP28330 430 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 SP2Q02086 613 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ZNF234Q14588 700 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 CGB2Q6NT52 195 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 TMEM135Q86UB9 458 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 GPALPP1Q8IXQ4 340 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 SPAG16Q8N0X2 631 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 C1orf52Q8N6N3 182 aaKnown RBP12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ZMIZ2Q8NF64 920 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 RHEBL1Q8TAI7 183 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 CCDC107Q8WV48 283 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ERVK-18Q9QC07 812 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 FBXW2Q9UKT8 454 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 METTL21EPA6NDL7 271 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 ZNF432O94892 652 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 IDSP22304 550 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 CMPK1P30085 196 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 MAP2K4P45985 399 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 CYBRD1Q53TN4 286 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 LCN8Q6JVE9 175 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 CHST9Q7L1S5 443 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 SYVN1Q86TM6 617 aa12.51□□□□□ -0.41
COL3A1-201ENST00000304636 WDTC1Q8N5D0 677 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms