RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GARNL3Q5VVW2 1013 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 AADACL2Q6P093 401 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 ZNF534Q76KX8 674 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 OTOAQ7RTW8 1153 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 MPP5Q8N3R9 675 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 SIRT6Q8N6T7 355 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 SLC35B2Q8TB61 432 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 LURAP1Q96LR2 239 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 C10orf90Q96M02 699 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 CATSPERZQ9NTU4 200 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 SLC2A6Q9UGQ3 507 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 AMFRQ9UKV5 643 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 TCAF1Q9Y4C2 921 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 CACNA1CQ13936 2221 aa14.06□□□□□ -0.16
CCDC88B-201ENST00000301897 LOC105369274A0A096LPK9 316 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 LOC102723532A0A0G2JNH3 316 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 RCCD1A6NED2 376 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 IQCF5A8MTL0 148 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 E7EVH7 732 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 TXNDC9O14530 226 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 PRAMEF2O60811 474 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 MED26O95402 600 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 MLYCDO95822 493 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 WDPCPO95876 746 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 CYC1P08574 325 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 PSMB5P28074 263 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 GDF10P55107 478 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 KLF1Q13351 362 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 SKOR2Q2VWA4 1001 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 LAPTM4BQ86VI4 370 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 OR4N4Q8N0Y3 316 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 LRRC57Q8N9N7 239 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 PPHLN1Q8NEY8 458 aaKnown RBP14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 OR2A1Q8NGT9 310 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 LKAAEAR1Q8TD35 194 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 TUBB6Q9BUF5 446 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 YIPF2Q9BWQ6 316 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 FRMD8P1Q9BZ68 369 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 ZNF700Q9H0M5 742 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 TSPY26PQ9H489 355 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 EPN1Q9Y6I3 576 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 DUSP10Q9Y6W6 482 aa14.05□□□□□ -0.16
CCDC88B-201ENST00000301897 SCN2AQ99250 2005 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 LOC102723996A0A087X1L8 192 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 OR5H15A6NDH6 313 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 ZNF839A8K0R7 811 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 H0YGG7 62 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 PKMP14618 531 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 RPS3P23396 243 aaKnown RBP eCLIP14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 ATP5DP30049 168 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 SLC26A3P40879 764 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 SMSP52788 366 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 ARF3P61204 181 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 EEF1A2Q05639 463 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 HIBCHQ6NVY1 386 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 PEX26Q7Z412 305 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 SYCE1Q8N0S2 351 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 KRT222Q8N1A0 295 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 DTWD1Q8N5C7 304 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 TAB3Q8N5C8 712 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 RERGQ96A58 199 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 PLCD4Q9BRC7 762 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 MESP1Q9BRJ9 268 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 DPH7Q9BTV6 452 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 ETNK1Q9HBU6 452 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 MRPS30Q9NP92 439 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 PCDHGB6Q9Y5F9 930 aa14.04□□□□□ -0.16
CCDC88B-201ENST00000301897 ZFHX3Q15911 3703 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 A0A1W2PPV9 198 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 H3BMM5 538 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 PFDN6O15212 129 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 CD3EAPO15446 510 aaKnown RBP14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 NDUFS3O75489 264 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 CCNDBP1O95273 360 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 SSTR2P30874 369 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 HSD17B2P37059 387 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 BDKRB1P46663 353 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 RELAQ04206 551 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 SEMA3AQ14563 771 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 ARHGAP19Q14CB8 494 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 FBXO42Q6P3S6 717 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 TMEM205Q6UW68 189 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 CSNK1A1LQ8N752 337 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 RNF214Q8ND24 703 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 METTL21AQ8WXB1 218 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 SMPDL3AQ92484 453 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 MMABQ96EY8 250 aaPredicted RBP14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 ZNF778Q96MU6 729 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 PANX2Q96RD6 677 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 DRC3Q9H069 523 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 P2RY12Q9H244 342 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 FAM114A2Q9NRY5 505 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 STMN3Q9NZ72 180 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 R3HDM2Q9Y2K5 976 aaKnown RBP14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 NFS1Q9Y697 457 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 NCOA6Q14686 2063 aaPredicted RBP14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 AKAP9Q99996 3911 aa14.03□□□□□ -0.16
CCDC88B-201ENST00000301897 MED13LQ71F56 2210 aa14.02□□□□□ -0.16
CCDC88B-201ENST00000301897 GRID2IPA4D2P6 1211 aa14.02□□□□□ -0.17
CCDC88B-201ENST00000301897 AP3B1O00203 1094 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms