RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 IQCJQ1A5X6 159 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 SIAH1Q8IUQ4 282 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 OR1M1Q8NGA1 313 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 MYLIPQ8WY64 445 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 PAPOLGQ9BWT3 736 aaKnown RBP4.74□□□□□ -1.65
CSMD3-201ENST00000297405 SLCO5A1Q9H2Y9 848 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 PDP1Q9P0J1 537 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-201ENST00000297405 VPS28Q9UK41 221 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 MN1Q10571 1320 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-201ENST00000297405 ARL5CA6NH57 179 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 NPIPA2E9PIF3 369 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 GH2P01242 217 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 CD48P09326 243 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 RPS19P39019 145 aaKnown RBP4.74□□□□□ -1.65
CSMD3-201ENST00000297405 CAP2P40123 477 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 KCNJ5P48544 419 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 SULT1A2P50226 295 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 HLCSP50747 726 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 B3GLCTQ6Y288 498 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 UBR7Q8N806 425 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 ACOT11Q8WXI4 607 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-201ENST00000297405 DPF1Q92782 380 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 TNFRSF25Q93038 417 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 NMUR2Q9GZQ4 415 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 OR52A5Q9H2C5 316 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 ACOT13Q9NPJ3 140 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 GPR179Q6PRD1 2367 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 E2F3O00716 465 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 HLA-DQA2P01906 255 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 IL7RP16871 459 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 HERVK_113P62684 666 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 GPSM2P81274 684 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 ATG9BQ674R7 924 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 TNS3Q68CZ2 1445 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 REEP3Q6NUK4 255 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 PIAS4Q8N2W9 510 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-201ENST00000297405 NANPQ8TBE9 248 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 PRICKLE1Q96MT3 831 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-201ENST00000297405 C2orf49Q9BVC5 232 aaPredicted RBP4.74□□□□□ -1.65
CSMD3-201ENST00000297405 ULBP1Q9BZM6 244 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 SLC19A3Q9BZV2 496 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 PTGES2Q9H7Z7 377 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 EVA1AQ9H8M9 152 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 PTPRHQ9HD43 1115 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 NLKQ9UBE8 527 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 ABCC3O15438 1527 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 FXYD6-FXYD2A0A087WZ82 144 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 TCRBV9S1A1TA0A576 114 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 UBXN7O94888 489 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 PLATP00750 562 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 MYF6P23409 242 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 SRPXP78539 464 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 SLC18A2Q05940 514 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 SPOCD1Q6ZMY3 1216 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 C3orf67Q6ZVT6 689 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 DSG4Q86SJ6 1040 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 RELL1Q8IUW5 271 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 FXYD6Q9H0Q3 95 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF780BQ9Y6R6 833 aa4.74□□□□□ -1.65
CSMD3-201ENST00000297405 FAM234BA2RU67 622 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 KHNYNO15037 678 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 GNALP38405 381 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ATP5IP56385 69 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RAB1AP62820 205 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CHAF1BQ13112 559 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 SF3A2Q15428 464 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 SF1Q15637 639 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 FAM153CQ494X1 144 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 CBWD6Q4V339 395 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 IER5Q5VY09 327 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 BBS12Q6ZW61 710 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 VN1R5Q7Z5H4 357 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 COMMD7Q86VX2 200 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TRIM48Q8IWZ4 208 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ABRAQ8N0Z2 381 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 HORMAD2Q8N7B1 307 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TTLL6Q8N841 843 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 OR2L8Q8NGY9 312 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 ZBED6CLQ96FA7 236 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 LRFN5Q96NI6 719 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 FN3KRPQ9HA64 309 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 FNDC3AQ9Y2H6 1198 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 A0A087WZ62 844 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TNFRSF11BO00300 401 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 IL1BP01584 269 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RPL13AP40429 203 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 LASP1Q14847 261 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 KCNJ8Q15842 424 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 GPAT3Q53EU6 434 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 C1orf186Q6ZWK4 172 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 P4HA3Q7Z4N8 544 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 LACC1Q8IV20 430 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 DCP1BQ8IZD4 617 aaKnown RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 B3GNT7Q8NFL0 401 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RAB3CQ96E17 227 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 PRMT6Q96LA8 375 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-201ENST00000297405 PARP14Q460N5 1801 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 TNRQ92752 1358 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 RFXAPO00287 272 aa4.73□□□□□ -1.65
CSMD3-201ENST00000297405 NME6O75414 186 aaPredicted RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms