RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ZNF658BQ4V348 819 aaPredicted RBP23.21■■□□□ 1.31
TRIM54-201ENST00000296098 USP51Q70EK9 711 aa23.21■■□□□ 1.31
TRIM54-201ENST00000296098 FKBP9P1Q75LS8 142 aa23.21■■□□□ 1.31
TRIM54-201ENST00000296098 SDCCAG3Q96C92 435 aa23.21■■□□□ 1.31
TRIM54-201ENST00000296098 NUS1Q96E22 293 aa23.21■■□□□ 1.31
TRIM54-201ENST00000296098 REXO4Q9GZR2 422 aaKnown RBP23.21■■□□□ 1.31
TRIM54-201ENST00000296098 MAGIXQ9H6Y5 334 aa23.21■■□□□ 1.31
TRIM54-201ENST00000296098 SGK2Q9HBY8 427 aa23.21■■□□□ 1.31
TRIM54-201ENST00000296098 A0A087WXM4 84 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 EDDM13A0A1B0GTR0 161 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 H0YAE9 185 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 NFATC1O95644 943 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 ACSM2AQ08AH3 577 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 UGT8Q16880 541 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 DUOXA1Q1HG43 343 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 HNRNPA1L2Q32P51 320 aaKnown RBP23.2■■□□□ 1.3
TRIM54-201ENST00000296098 ACSM2BQ68CK6 577 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 B3GNT6Q6ZMB0 384 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 TRIM74Q86UV6 250 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 STK32CQ86UX6 486 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 TMIEQ8NEW7 156 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 OR7A2PQ8NGA2 310 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 POP5Q969H6 163 aaKnown RBP23.2■■□□□ 1.3
TRIM54-201ENST00000296098 TMEM106CQ9BVX2 250 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 SOX17Q9H6I2 414 aaPredicted RBP23.2■■□□□ 1.3
TRIM54-201ENST00000296098 BRF2Q9HAW0 419 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 TCF20Q9UGU0 1960 aaKnown RBP23.2■■□□□ 1.3
TRIM54-201ENST00000296098 KIAA1549LQ6ZVL6 1849 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 HPRP00739 348 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 CST1P01037 141 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 ALPLP05186 524 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 COX7A2P14406 83 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 SLC6A11P48066 632 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 TRPC1P48995 793 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 C9orf64Q5T6V5 341 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 ZNF765Q7L2R6 523 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 ZDHHC13Q8IUH4 622 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 CLEC4FQ8N1N0 589 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 METTL2AQ96IZ6 378 aaKnown RBP23.2■■□□□ 1.3
TRIM54-201ENST00000296098 ZFYVE19Q96K21 471 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 THG1LQ9NWX6 298 aaKnown RBP23.2■■□□□ 1.3
TRIM54-201ENST00000296098 CEPT1Q9Y6K0 416 aa23.2■■□□□ 1.3
TRIM54-201ENST00000296098 TRIM64CA6NLI5 447 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 RECQL5O94762 991 aaPredicted RBP23.19■■□□□ 1.3
TRIM54-201ENST00000296098 MYO1DO94832 1006 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 SERPINA1P01009 418 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 RB1P06400 928 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 MYCLP1P12525 358 aaPredicted RBP23.19■■□□□ 1.3
TRIM54-201ENST00000296098 DOK6Q6PKX4 331 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 TRAPPC5Q8IUR0 188 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 C12orf76Q8N812 135 aaPredicted RBP23.19■■□□□ 1.3
TRIM54-201ENST00000296098 OR2AG1Q9H205 316 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 DEC1Q9P2X7 70 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 ALPK3Q96L96 1907 aa23.19■■□□□ 1.3
TRIM54-201ENST00000296098 TRIM64A6NGJ6 449 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 K7ESM1 405 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 FPGTO14772 594 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 THRBP10828 461 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 MYOGP15173 224 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 HOXB6P17509 224 aaKnown RBP23.18■■□□□ 1.3
TRIM54-201ENST00000296098 C21orf58P58505 322 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 RAET1GQ6H3X3 334 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 FBXO15Q8NCQ5 510 aaPredicted RBP23.18■■□□□ 1.3
TRIM54-201ENST00000296098 CDC26Q8NHZ8 85 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 NETO1Q8TDF5 533 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 STARD8Q92502 1023 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 PANX1Q96RD7 426 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 FAM120CQ9NX05 1096 aaKnown RBP23.18■■□□□ 1.3
TRIM54-201ENST00000296098 GULP1Q9UBP9 304 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 UTS2RQ9UKP6 389 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 EVPLLA8MZ36 301 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 G3V2T6 193 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 LILRB5O75023 590 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 C1orf105O95561 183 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 C6P13671 934 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 IL1RNP18510 177 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 GPR1P46091 355 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 SLC14A1Q13336 389 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 ELAVL3Q14576 367 aaKnown RBP23.18■■□□□ 1.3
TRIM54-201ENST00000296098 GAB4Q2WGN9 574 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 FAM78AQ5JUQ0 283 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 SVOPLQ8N434 492 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 PPP1R16AQ96I34 528 aa23.18■■□□□ 1.3
TRIM54-201ENST00000296098 MAGEB17A8MXT2 336 aa23.17■■□□□ 1.3
TRIM54-201ENST00000296098 ADRB3P13945 408 aa23.17■■□□□ 1.3
TRIM54-201ENST00000296098 CDH2P19022 906 aaPredicted RBP23.17■■□□□ 1.3
TRIM54-201ENST00000296098 EIF4HQ15056 248 aaKnown RBP23.17■■□□□ 1.3
TRIM54-201ENST00000296098 TMC5Q6UXY8 1006 aa23.17■■□□□ 1.3
TRIM54-201ENST00000296098 SERPINA11Q86U17 422 aa23.17■■□□□ 1.3
TRIM54-201ENST00000296098 CFAP206Q8IYR0 622 aa23.17■■□□□ 1.3
TRIM54-201ENST00000296098 OR8J2Q8NGG1 315 aa23.17■■□□□ 1.3
TRIM54-201ENST00000296098 C11orf24Q96F05 449 aaPredicted RBP23.17■■□□□ 1.3
TRIM54-201ENST00000296098 MAGED1Q9Y5V3 778 aaPredicted RBP23.17■■□□□ 1.3
TRIM54-201ENST00000296098 KCNE2Q9Y6J6 123 aa23.17■■□□□ 1.3
TRIM54-201ENST00000296098 H3BSA7 217 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 PLK4O00444 970 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 GNGT2O14610 69 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 CCR3P51677 355 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 PNLIPRP1P54315 467 aa23.16■■□□□ 1.3
TRIM54-201ENST00000296098 WNT3P56703 355 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms