RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ACSM2BQ68CK6 577 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 LAIR2Q6ISS4 152 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 STARD8Q92502 1023 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 NELL1Q92832 810 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 SH3KBP1Q96B97 665 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 LGALS12Q96DT0 336 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 RDH12Q96NR8 316 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 ALPK1Q96QP1 1244 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 KCNH6Q9H252 994 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 RERGLQ9H628 205 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 MARCH5Q9NX47 278 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 TMEM161AQ9NX61 479 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 SNX8Q9Y5X2 465 aa12.29□□□□□ -0.44
LIG1-201ENST00000263274 A0A096LPI6 279 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 EFCAB9A8MZ26 197 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 ALOX12P18054 663 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 ACRV1P26436 265 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 C21orf33P30042 268 aaPredicted RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 CRATP43155 626 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 CLK3P49761 638 aaKnown RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 ABHD18Q0P651 414 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 ATP13A5Q4VNC0 1218 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 ATG9BQ674R7 924 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 SIX5Q8N196 739 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 GPR26Q8NDV2 337 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 MYLIPQ8WY64 445 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 FOXJ1Q92949 421 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 FKBP10Q96AY3 582 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 CDK5RAP1Q96SZ6 601 aaKnown RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 IL37Q9NZH6 218 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 PCDH10Q9P2E7 1040 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 PPT2Q9UMR5 302 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 ATP11BQ9Y2G3 1177 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 PCDHGA10Q9Y5H3 936 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 KIAA0100Q14667 2235 aaKnown RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 RPLP2P05387 115 aaKnown RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 BMP4P12644 408 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 TCEA1P23193 301 aaKnown RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 CCL23P55773 120 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 RPP38P78345 283 aaKnown RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 ALG1LQ6GMV1 187 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 LMNTD1Q8N9Z9 388 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 PIH1D2Q8WWB5 315 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 CPPED1Q9BRF8 314 aaPredicted RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 C2orf49Q9BVC5 232 aaPredicted RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 ATP13A3Q9H7F0 1226 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 EXOSC4Q9NPD3 245 aaKnown RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 THUMPD1Q9NXG2 353 aaKnown RBP12.28□□□□□ -0.44
LIG1-201ENST00000263274 GIN1Q9NXP7 522 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 CCL27Q9Y4X3 112 aa12.28□□□□□ -0.44
LIG1-201ENST00000263274 MAGEB17A8MXT2 336 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 TRBC1P01850 177 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 KDELR2P33947 212 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 CLDN8P56748 225 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 ARPC4P59998 168 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 CREMQ03060 361 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 LRRC66Q68CR7 880 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 SERPINA13PQ6UXR4 307 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 ANKRD13BQ86YJ7 626 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 NXPE1Q8N323 547 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 SCLYQ96I15 445 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 SPATA17Q96L03 361 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 THG1LQ9NWX6 298 aaKnown RBP12.27□□□□□ -0.44
LIG1-201ENST00000263274 KCTD5Q9NXV2 234 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 NINQ8N4C6 2090 aa12.27□□□□□ -0.44
LIG1-201ENST00000263274 NPIPB15A6NHN6 443 aaPredicted RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 CCNDBP1O95273 360 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 RETP07949 1114 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 CCDC159P0C7I6 412 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 ITIH1P19827 911 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 CCR7P32248 378 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 NOXRED1Q6NXP6 359 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 CLIP4Q8N3C7 705 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 SVOPQ8N4V2 548 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 CCDC115Q96NT0 180 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 COPS4Q9BT78 406 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 DCSTAMPQ9H295 470 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 TRIT1Q9H3H1 467 aaKnown RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 MGAT4DA6NG13 374 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 SLC22A1O15245 554 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 AIREO43918 545 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 MYO1DO94832 1006 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 OR56A5P0C7T3 313 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 MAPK1P28482 360 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 GTF2E2P29084 291 aaKnown RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 SERPINA4P29622 427 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 WEE1P30291 646 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 DNAJA1P31689 397 aaKnown RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 MASP1P48740 699 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 NKX2-5P52952 324 aaPredicted RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 LRRC74AQ0VAA2 488 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 MADCAM1Q13477 382 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 SOWAHCQ53LP3 525 aaPredicted RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 LAIR1Q6GTX8 287 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 FAM180BQ6P0A1 224 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 VRK3Q8IV63 474 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 STX19Q8N4C7 294 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 BCL7CQ8WUZ0 217 aaPredicted RBP12.27□□□□□ -0.45
LIG1-201ENST00000263274 S100ZQ8WXG8 99 aa12.27□□□□□ -0.45
LIG1-201ENST00000263274 PLD4Q96BZ4 506 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms