RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TMCO6Q96DC7 493 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 RNF39Q9H2S5 420 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 KAT8Q9H7Z6 458 aaKnown RBP18.66■□□□□ 0.58
UPF1-201ENST00000262803 ZCCHC3Q9NUD5 404 aaKnown RBP18.66■□□□□ 0.58
UPF1-201ENST00000262803 HAS3O00219 553 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 HFE2Q6ZVN8 426 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 C1orf216Q8TAB5 229 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 SGCDQ92629 289 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 EURLQ9NYK6 297 aa18.66■□□□□ 0.58
UPF1-201ENST00000262803 NKX1-2Q9UD57 310 aaPredicted RBP18.66■□□□□ 0.58
UPF1-201ENST00000262803 OR14I1A6ND48 311 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 CCNKO75909 580 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 ALPIP09923 528 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 MERTKQ12866 999 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 CTU1Q7Z7A3 348 aaKnown RBP18.65■□□□□ 0.58
UPF1-201ENST00000262803 SLC22A15Q8IZD6 547 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 OR4C15Q8NGM1 316 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 TNFAIP8L1Q8WVP5 186 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 CANT1Q8WVQ1 401 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 AKTIPQ9H8T0 292 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 CCDC59Q9P031 241 aaKnown RBP18.65■□□□□ 0.58
UPF1-201ENST00000262803 SERTAD3Q9UJW9 196 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 HAPLN1P10915 354 aaPredicted RBP18.65■□□□□ 0.58
UPF1-201ENST00000262803 CCL5P13501 91 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 ACP5P13686 325 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 CNPY1Q3B7I2 92 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 IQCCQ4KMZ1 466 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 CDCA2Q69YH5 1023 aaPredicted RBP18.65■□□□□ 0.58
UPF1-201ENST00000262803 OR4K17Q8NGC6 315 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 SNIP1Q8TAD8 396 aaKnown RBP18.65■□□□□ 0.58
UPF1-201ENST00000262803 CDKN2AIPNLQ96HQ2 116 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 POLR2J3Q9H1A7 115 aaKnown RBP18.65■□□□□ 0.58
UPF1-201ENST00000262803 TMEM5Q9Y2B1 443 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 SUOXP51687 545 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 FRMD7Q6ZUT3 714 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 PTPN18Q99952 460 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 MED28Q9H204 178 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 TMEM233B4DJY2 109 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 INPPL1O15357 1258 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 CLEC3AO75596 197 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 AHSGP02765 367 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 TMCO2Q7Z6W1 182 aaPredicted RBP18.65■□□□□ 0.58
UPF1-201ENST00000262803 SLC51AQ86UW1 340 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 CDK15Q96Q40 435 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 ASPNQ9BXN1 380 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 POFUT2Q9Y2G5 429 aa18.65■□□□□ 0.58
UPF1-201ENST00000262803 SERINC3Q13530 473 aa18.64■□□□□ 0.58
UPF1-201ENST00000262803 CHRDL2Q6WN34 429 aa18.64■□□□□ 0.58
UPF1-201ENST00000262803 ZC3H3Q8IXZ2 948 aaKnown RBP18.64■□□□□ 0.58
UPF1-201ENST00000262803 CHCHD4Q8N4Q1 142 aa18.64■□□□□ 0.58
UPF1-201ENST00000262803 OR10H4Q8NGA5 316 aa18.64■□□□□ 0.58
UPF1-201ENST00000262803 RAB2BQ8WUD1 216 aa18.64■□□□□ 0.58
UPF1-201ENST00000262803 PHF12Q96QT6 1004 aa18.64■□□□□ 0.58
UPF1-201ENST00000262803 MTERF1Q99551 399 aaKnown RBP18.64■□□□□ 0.58
UPF1-201ENST00000262803 A0A0J9YVX5 310 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 SOD2P04179 222 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 HNRNPA1P09651 372 aaKnown RBP eCLIP18.64■□□□□ 0.57
UPF1-201ENST00000262803 FRG2Q64ET8 278 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 FBXL22Q6P050 247 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 DCUN1D3Q8IWE4 304 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 FRG2BQ96QU4 278 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 ANKRA2Q9H9E1 313 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 ZDHHC2Q9UIJ5 367 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 FZD9O00144 591 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 ORC5O43913 435 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 PUM1Q14671 1186 aaKnown RBP eCLIP18.64■□□□□ 0.57
UPF1-201ENST00000262803 ZSCAN4Q8NAM6 433 aaPredicted RBP18.64■□□□□ 0.57
UPF1-201ENST00000262803 DDX1Q92499 740 aaKnown RBP18.64■□□□□ 0.57
UPF1-201ENST00000262803 LRRC58Q96CX6 371 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 TRIB3Q96RU7 358 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 CERS4Q9HA82 394 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 PNO1Q9NRX1 252 aaKnown RBP18.64■□□□□ 0.57
UPF1-201ENST00000262803 FAM120CQ9NX05 1096 aaKnown RBP18.64■□□□□ 0.57
UPF1-201ENST00000262803 ACSL5Q9ULC5 683 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 WASF3Q9UPY6 502 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 FMN2Q9NZ56 1722 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 TEX13CA0A0J9YWL9 993 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 OR5K4A6NMS3 321 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 NPPAP01160 153 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 MYCLP1P12525 358 aaPredicted RBP18.64■□□□□ 0.57
UPF1-201ENST00000262803 AOC1P19801 751 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 RAB15P59190 212 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 OGFOD2Q6N063 350 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 SDR16C5Q8N3Y7 309 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 BRI3BPQ8WY22 251 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 PELOQ9BRX2 385 aaKnown RBP18.64■□□□□ 0.57
UPF1-201ENST00000262803 SUSD2Q9UGT4 822 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 B4DGG1 531 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 NPC1O15118 1278 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 ECI2O75521 394 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 PEPDP12955 493 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 AHCYP23526 432 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 SLC6A4P31645 630 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 JAG1P78504 1218 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 GDF6Q6KF10 455 aaPredicted RBP18.64■□□□□ 0.57
UPF1-201ENST00000262803 ADAP2Q9NPF8 381 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 ALKBH4Q9NXW9 302 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 GLS2Q9UI32 602 aa18.64■□□□□ 0.57
UPF1-201ENST00000262803 SEMG2Q02383 582 aa18.63■□□□□ 0.57
UPF1-201ENST00000262803 OC90Q02509 493 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms