RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 UNC5CO95185 931 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 FKBP9O95302 570 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 SNRPB2P08579 225 aaKnown RBP18.49■□□□□ 0.55
CLN3-262ENST00000637699 COX6A1P12074 109 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 FBLP22087 321 aaKnown RBP18.49■□□□□ 0.55
CLN3-262ENST00000637699 CYLC1P35663 651 aaPredicted RBP18.49■□□□□ 0.55
CLN3-262ENST00000637699 SOX11P35716 441 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 EMP2P54851 167 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 EEF1A2Q05639 463 aaKnown RBP18.49■□□□□ 0.55
CLN3-262ENST00000637699 TMED2Q15363 201 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 ZXDCQ2QGD7 858 aaPredicted RBP18.49■□□□□ 0.55
CLN3-262ENST00000637699 CCSMST1Q4G0I0 132 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 TMEM207Q6UWW9 146 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 OR2L3Q8NG85 312 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 GSDMBQ8TAX9 411 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 SKA2Q8WVK7 121 aaPredicted RBP18.49■□□□□ 0.55
CLN3-262ENST00000637699 HAS2Q92819 552 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 RAD51AP1Q96B01 352 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 RAB11FIP5Q9BXF6 653 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 NFS1Q9Y697 457 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 DCHS2Q6V1P9 2916 aa18.49■□□□□ 0.55
CLN3-262ENST00000637699 CELSR1Q9NYQ6 3014 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 CCL21O00585 134 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 FFAR3O14843 346 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 GPR42O15529 346 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 SERPINA7P05543 415 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 CELA2AP08217 269 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 ERVK-10P10266 1014 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 CXCR2P25025 360 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 PPARGP37231 505 aaPredicted RBP18.48■□□□□ 0.55
CLN3-262ENST00000637699 GRIA1P42261 906 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 BDKRB1P46663 353 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 PRAMEP78395 509 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 MUM1Q2TAK8 710 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 FAAH2Q6GMR7 532 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 CNSTQ6PJW8 725 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 PPP1R21Q6ZMI0 780 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 MRGPRGQ86SM5 289 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 RAB42Q8N4Z0 105 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 CCDC120Q96HB5 630 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 CABS1Q96KC9 395 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 RBSNQ9H1K0 784 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 SH3BGRL2Q9UJC5 107 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 ANAPC5Q9UJX4 755 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 RUVBL2Q9Y230 463 aaKnown RBP18.48■□□□□ 0.55
CLN3-262ENST00000637699 F8P00451 2351 aa18.48■□□□□ 0.55
CLN3-262ENST00000637699 C2CD3Q4AC94 2353 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 PKDREJQ9NTG1 2253 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 IDSB3KWA1 339 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 WFS1O76024 890 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 C1orf105O95561 183 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 FDXRP22570 491 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 ADRA1DP25100 572 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 HTR1EP28566 365 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 YBX1P67809 324 aaKnown RBP18.47■□□□□ 0.55
CLN3-262ENST00000637699 ACVR1Q04771 509 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 INAQ16352 499 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 PTRHD1Q6GMV3 140 aaKnown RBP18.47■□□□□ 0.55
CLN3-262ENST00000637699 GDF7Q7Z4P5 450 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 AMER2Q8N7J2 671 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 OR2A1Q8NGT9 310 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 SLC35B2Q8TB61 432 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 CALR3Q96L12 384 aaKnown RBP18.47■□□□□ 0.55
CLN3-262ENST00000637699 C10orf90Q96M02 699 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 ETNK1Q9HBU6 452 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 TRPC4Q9UBN4 977 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 RIMKLBQ9ULI2 386 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 MRPS2Q9Y399 296 aaKnown RBP18.47■□□□□ 0.55
CLN3-262ENST00000637699 KLK4Q9Y5K2 254 aa18.47■□□□□ 0.55
CLN3-262ENST00000637699 EPN1Q9Y6I3 576 aaPredicted RBP18.47■□□□□ 0.55
CLN3-262ENST00000637699 AKAP9Q99996 3911 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 IGLV3-12A0A075B6K2 115 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 IGHV1-45A0A0A0MS14 117 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 TCRBV7S2A1N4TA0A589 114 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 GRID2IPA4D2P6 1211 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 PRMT5O14744 637 aaPredicted RBP18.46■□□□□ 0.55
CLN3-262ENST00000637699 RASAL1O95294 804 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 BMP10O95393 424 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 WDPCPO95876 746 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 MST1P26927 711 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 RIPPLY3P57055 190 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 FBXO42Q6P3S6 717 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 RNF44Q7L0R7 432 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 LRRC57Q8N9N7 239 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 ZFYVE21Q9BQ24 234 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 DPH7Q9BTV6 452 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 ACAT2Q9BWD1 397 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 CATSPERZQ9NTU4 200 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 MARCH4Q9P2E8 410 aaPredicted RBP18.46■□□□□ 0.55
CLN3-262ENST00000637699 SEC14L3Q9UDX4 400 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 TSR3Q9UJK0 312 aaKnown RBP18.46■□□□□ 0.55
CLN3-262ENST00000637699 CDC14AQ9UNH5 594 aa18.46■□□□□ 0.55
CLN3-262ENST00000637699 A0A1W2PPV9 198 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 ERI2A8K979 691 aaKnown RBP18.45■□□□□ 0.54
CLN3-262ENST00000637699 E7EVH7 732 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 H0YGG7 62 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 HEXBP07686 556 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 PTGER4P35408 488 aa18.45■□□□□ 0.54
CLN3-262ENST00000637699 ARF3P61204 181 aaPredicted RBP18.45■□□□□ 0.54
CLN3-262ENST00000637699 KLF1Q13351 362 aaPredicted RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms