RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SUV39H1O43463 412 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 CATP04040 527 aaKnown RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 PSMB5P28074 263 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 SSTR1P30872 391 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 HSD17B2P37059 387 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 FRG1Q14331 258 aaKnown RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 NCF4Q15080 339 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 KIAA0408Q6ZU52 694 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 SPNS2Q8IVW8 549 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 GSPT2Q8IYD1 628 aaKnown RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 ZNF655Q8N720 491 aaPredicted RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 DHRS4Q9BTZ2 278 aa18.47■□□□□ 0.55
CLN3-260ENST00000637578 PPANQ9NQ55 473 aaKnown RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 TSR3Q9UJK0 312 aaKnown RBP18.47■□□□□ 0.55
CLN3-260ENST00000637578 CTSVO60911 334 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 KLF7O75840 302 aaPredicted RBP18.46■□□□□ 0.55
CLN3-260ENST00000637578 AHSGP02765 367 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 GPX6P59796 221 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 NFKB2Q00653 900 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 CEP128Q6ZU80 1094 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 GABPB2Q8TAK5 448 aaPredicted RBP18.46■□□□□ 0.55
CLN3-260ENST00000637578 C9orf43Q8TAL5 461 aaPredicted RBP18.46■□□□□ 0.55
CLN3-260ENST00000637578 PKP4Q99569 1192 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 MIPEPQ99797 713 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 TSPYL1Q9H0U9 437 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 LRRC4CQ9HCJ2 640 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 MOCS1Q9NZB8 636 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 SLC17A6Q9P2U8 582 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 SNX7Q9UNH6 387 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 MAN2B2Q9Y2E5 1009 aa18.46■□□□□ 0.55
CLN3-260ENST00000637578 GCN1Q92616 2671 aaKnown RBP18.46■□□□□ 0.54
CLN3-260ENST00000637578 FITM1A5D6W6 292 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 VPS26AO75436 327 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 ONECUT2O95948 504 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 MYBL2P10244 700 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 SKIV2L2P42285 1042 aaKnown RBP18.45■□□□□ 0.54
CLN3-260ENST00000637578 DCDP81605 110 aaKnown RBP18.45■□□□□ 0.54
CLN3-260ENST00000637578 TEDDM1Q5T9Z0 273 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 C3orf62Q6ZUJ4 267 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 RELL1Q8IUW5 271 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 SMPDL3AQ92484 453 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 C17orf62Q9BQA9 187 aa18.45■□□□□ 0.54
CLN3-260ENST00000637578 DHCR7Q9UBM7 475 aaKnown RBP18.45■□□□□ 0.54
CLN3-260ENST00000637578 C9J4A7 227 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 SRPX2O60687 465 aaPredicted RBP18.44■□□□□ 0.54
CLN3-260ENST00000637578 RFPL1O75677 317 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 SLC16A8O95907 504 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 FAM153BP0C7A2 387 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 TNFRSF8P28908 595 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 ARSFP54793 590 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 YBX1P67809 324 aaKnown RBP18.44■□□□□ 0.54
CLN3-260ENST00000637578 MGAT5Q09328 741 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 ERCC6LQ2NKX8 1250 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 FAM153CQ494X1 144 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 TCTE1Q5JU00 501 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 UBAP2Q5T6F2 1119 aaKnown RBP18.44■□□□□ 0.54
CLN3-260ENST00000637578 FAM69BQ5VUD6 431 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 YOD1Q5VVQ6 348 aaPredicted RBP18.44■□□□□ 0.54
CLN3-260ENST00000637578 UGT3A1Q6NUS8 523 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 LRRC56Q8IYG6 542 aaPredicted RBP18.44■□□□□ 0.54
CLN3-260ENST00000637578 CPNE9Q8IYJ1 553 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 EIF1ADQ8N9N8 165 aaKnown RBP18.44■□□□□ 0.54
CLN3-260ENST00000637578 ZNF480Q8WV37 535 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 NDC1Q9BTX1 674 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 FER1L5A0AVI2 2057 aa18.44■□□□□ 0.54
CLN3-260ENST00000637578 TCRBV9S1A1TA0A576 114 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 OR2A25A4D2G3 310 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 E7ENX8 843 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 J3QKU1 62 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 CD63P08962 238 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 GSTA2P09210 222 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 PNLIPRP1P54315 467 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 TAP2Q03519 686 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 NAA25Q14CX7 972 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 NKAIN1Q4KMZ8 207 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 C1orf189Q5VU69 101 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 TCTN3Q6NUS6 607 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 MRPL14Q6P1L8 145 aaKnown RBP18.43■□□□□ 0.54
CLN3-260ENST00000637578 RNF44Q7L0R7 432 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 DLG3Q92796 817 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 NDNQ99608 321 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 CDC42EP4Q9H3Q1 356 aaKnown RBP18.43■□□□□ 0.54
CLN3-260ENST00000637578 SLC22A11Q9NSA0 550 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 TAS2R13Q9NYV9 303 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 NINJ2Q9NZG7 142 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 ANKMY1Q9P2S6 941 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 TLK1Q9UKI8 766 aa18.43■□□□□ 0.54
CLN3-260ENST00000637578 HEMK1Q9Y5R4 338 aaPredicted RBP18.43■□□□□ 0.54
CLN3-260ENST00000637578 IGKV1-8A0A0C4DH67 115 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 ZNF839A8K0R7 811 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 MKRN2OSH3BPM6 223 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 ZBTB14O43829 449 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 SLC28A2O43868 658 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 NRP2O60462 931 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 PIAS1O75925 651 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 ITGAXP20702 1163 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 CMPK1P30085 196 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 CDKN2DP55273 166 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 VSNL1P62760 191 aa18.42■□□□□ 0.54
CLN3-260ENST00000637578 LRRC8EQ6NSJ5 796 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms