RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 EVPLLA8MZ36 301 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SCN2BO60939 215 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 C1SP09871 688 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 JUPP14923 745 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CXCR4P61073 352 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SRSF11Q05519 484 aaKnown RBP12.4□□□□□ -0.42
LINC00540-203ENST00000631321 RAPSNQ13702 412 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SPCS2Q15005 226 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CTF1Q16619 201 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 OR4F3Q6IEY1 312 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 ERICH5Q6P6B1 374 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 DCDC5Q6ZRR9 648 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 NEK10Q6ZWH5 1172 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 VRK3Q8IV63 474 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 ZZZ3Q8IYH5 903 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SLC39A11Q8N1S5 342 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 SLC15A4Q8N697 577 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CHPT1Q8WUD6 406 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 EGLN2Q96KS0 407 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 APOLD1Q96LR9 279 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 MRPL17Q9NRX2 175 aaKnown RBP12.4□□□□□ -0.42
LINC00540-203ENST00000631321 IRAK4Q9NWZ3 460 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 CFAP97Q9P2B7 532 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 MBD1Q9UIS9 605 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-203ENST00000631321 U3KQV3 271 aa12.4□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF99A8MXY4 864 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 UGDHO60701 494 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 MITFO75030 526 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 INMTO95050 263 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 TFPTP0C1Z6 253 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 GPX2P18283 190 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 CTSOP43234 321 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 SPINT3P49223 89 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 DAPP51397 102 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 WNT3P56703 355 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 SEMG2Q02383 582 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 HSPA14Q0VDF9 509 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 CSTF3Q12996 717 aaKnown RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 VMACQ2NL98 169 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 C22orf39Q6P5X5 142 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 GALNT18Q6P9A2 607 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 LINC00299Q6ZSB3 139 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 FAR1Q8WVX9 515 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 FBXL8Q96CD0 374 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 ZNF641Q96N77 438 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 P2RY13Q9BPV8 354 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 DUSP21Q9H596 190 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 WARS2Q9UGM6 360 aaKnown RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 ABCG2Q9UNQ0 655 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 SOBPA7XYQ1 873 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 NDUFS2O75306 463 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 SULT1C4O75897 302 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 GABARAPO95166 117 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 LRATO95237 230 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 KCNK5O95279 499 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 ANGPTL1O95841 491 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 ATP1B2P14415 290 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 CYP2A7P20853 494 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 FPR1P21462 350 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 DNAJA1P31689 397 aaKnown RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 STK19P49842 368 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 KCNC4Q03721 635 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 EMX1Q04741 257 aaPredicted RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 UGT8Q16880 541 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 LIPJQ5W064 366 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 C16orf87Q6PH81 154 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 GAREM2Q75VX8 874 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 CEP68Q76N32 757 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 CYP2U1Q7Z449 544 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 B3GNT8Q7Z7M8 397 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 ABHD11Q8NFV4 315 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 OR8J2Q8NGG1 315 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 OR10Q1Q8NGQ4 319 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 CNIH3Q8TBE1 160 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 BARD1Q99728 777 aaKnown RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 DGCR6LQ9BY27 220 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 REXO4Q9GZR2 422 aaKnown RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 ABCG8Q9H221 673 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 FAM120CQ9NX05 1096 aaKnown RBP12.39□□□□□ -0.43
LINC00540-203ENST00000631321 RPS6KA6Q9UK32 745 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 SLC22A14Q9Y267 594 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 SH3BP1Q9Y3L3 701 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 CORINQ9Y5Q5 1042 aa12.39□□□□□ -0.43
LINC00540-203ENST00000631321 PIKFYVEQ9Y2I7 2098 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 E9PQ18 207 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 CLIC1O00299 241 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 KPNA5O15131 536 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 DPM1O60762 260 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 HNRNPCP07910 306 aaKnown RBP eCLIP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 CLK3P49761 638 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PFN3P60673 137 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 CYP4F8P98187 520 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 IL5RAQ01344 420 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 KCNC3Q14003 757 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PTOV1Q86YD1 416 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PARP8Q8N3A8 854 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 MCOLN3Q8TDD5 553 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PYCR2Q96C36 320 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 TMEM169Q96HH4 297 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 METTL2AQ96IZ6 378 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms